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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.321 C 0.179 G 0.179 T 0.321 

MOTIF 1-AGCAAACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 3.3e-001
 0.825419 0.015579 0.081080 0.077922
 0.001638 0.071983 0.903261 0.023118
 0.037056 0.889551 0.036336 0.037056
 0.906492 0.020001 0.071869 0.001638
 0.906492 0.071869 0.000917 0.020722
 0.925690 0.036336 0.000917 0.037056
 0.001638 0.995807 0.000917 0.001638
 0.981866 0.000917 0.000917 0.016300

MOTIF 2-CTGCCTTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.044739 0.952177 0.001107 0.001977
 0.087637 0.086906 0.009286 0.816171
 0.001977 0.043869 0.952177 0.001977
 0.044739 0.909416 0.043869 0.001977
 0.001977 0.994938 0.001107 0.001977
 0.044739 0.001107 0.043869 0.910285
 0.087637 0.086699 0.001107 0.824557
 0.523567 0.172566 0.043869 0.259999

MOTIF 3-ATAATTTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 8.8e-001
 0.990785 0.002434 0.002434 0.004346
 0.004346 0.002434 0.002434 0.990785
 0.990785 0.002434 0.002434 0.004346
 0.990785 0.002434 0.002434 0.004346
 0.004346 0.002434 0.002434 0.990785
 0.004346 0.002434 0.096433 0.896786
 0.232371 0.002434 0.002434 0.762760
 0.004346 0.988873 0.002434 0.004346

MOTIF 4-CAACTTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 9.5e-001
 0.002349 0.993987 0.001316 0.002349
 0.871790 0.001316 0.124545 0.002349
 0.917030 0.022345 0.001316 0.059310
 0.002349 0.993987 0.001316 0.002349
 0.002349 0.001316 0.001316 0.995020
 0.053148 0.001316 0.001316 0.944221
 0.620970 0.052115 0.205497 0.121419
 0.791660 0.052115 0.103077 0.053148

MOTIF 5-CATTTCSA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 1.0e+000
 0.001165 0.997016 0.000653 0.001165
 0.879521 0.051063 0.000653 0.068764
 0.001165 0.000653 0.126921 0.871260
 0.154813 0.000653 0.000653 0.843882
 0.001165 0.172832 0.000653 0.825350
 0.001165 0.929337 0.068332 0.001165
 0.026370 0.511802 0.306154 0.155673
 0.997529 0.000653 0.000653 0.001165

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Camta.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Camta/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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