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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-AGRTGGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 210 P= 3.6e-009
 0.999225 0.000256 0.000256 0.000264
 0.000264 0.000256 0.999217 0.000264
 0.359063 0.000256 0.640418 0.000264
 0.000264 0.000256 0.123454 0.876027
 0.000264 0.000256 0.999217 0.000264
 0.000264 0.000256 0.970289 0.029192
 0.034833 0.956075 0.007453 0.001640
 0.000264 0.000256 0.992020 0.007461

MOTIF 2-CGTCCGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 5.0e-001
 0.153175 0.844894 0.000950 0.000981
 0.000981 0.308318 0.689721 0.000981
 0.215879 0.057881 0.054578 0.671663
 0.000981 0.970318 0.000950 0.027751
 0.000981 0.970318 0.027721 0.000981
 0.000981 0.054535 0.863107 0.081378
 0.012063 0.932379 0.000950 0.054608
 0.000981 0.809219 0.000950 0.188849

MOTIF 3-CCGACTGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.023082 0.931464 0.022373 0.023082
 0.023082 0.931464 0.022373 0.023082
 0.023082 0.022373 0.931464 0.023082
 0.932173 0.022373 0.022373 0.023082
 0.023082 0.931464 0.022373 0.023082
 0.023082 0.022373 0.022373 0.932173
 0.023082 0.022373 0.931464 0.023082
 0.023082 0.022373 0.022373 0.932173

MOTIF 4-AATTTTCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 7.7e-001
 0.694769 0.066222 0.205641 0.033368
 0.838239 0.083819 0.077342 0.000600
 0.049910 0.000582 0.067277 0.882231
 0.008792 0.000582 0.007364 0.983262
 0.086007 0.049785 0.083313 0.780895
 0.000600 0.147830 0.004593 0.846977
 0.049910 0.896260 0.000582 0.053249
 0.104754 0.186163 0.668739 0.040344

MOTIF 5-AAACGRAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 100 P= 9.9e-001
 0.995822 0.001378 0.001378 0.001422
 0.840327 0.001378 0.001378 0.156917
 0.995822 0.001378 0.001378 0.001422
 0.001422 0.917905 0.079251 0.001422
 0.001422 0.001378 0.878969 0.118232
 0.623781 0.001378 0.352507 0.022334
 0.918199 0.040190 0.001378 0.040233
 0.723517 0.001378 0.195936 0.079170

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CTCF.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CTCF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.74 seconds
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