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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.284 C 0.216 G 0.216 T 0.284 

MOTIF 1-AGTGTGRC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 1.2e-001
 0.997327 0.000806 0.000806 0.001062
 0.001062 0.000806 0.997070 0.001062
 0.026954 0.000806 0.026698 0.945543
 0.052929 0.000806 0.945203 0.001062
 0.026954 0.000806 0.000806 0.971435
 0.026954 0.000806 0.971178 0.001062
 0.605818 0.000806 0.392315 0.001062
 0.001062 0.997070 0.000806 0.001062

MOTIF 2-AAAAATAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.2e-001
 0.994158 0.001761 0.001761 0.002321
 0.994158 0.001761 0.001761 0.002321
 0.846754 0.001761 0.114915 0.036571
 0.653966 0.115097 0.228616 0.002321
 0.994158 0.001761 0.001761 0.002321
 0.002321 0.001761 0.001761 0.994158
 0.994158 0.001761 0.001761 0.002321
 0.002321 0.993598 0.001761 0.002321

MOTIF 3-ATCGATAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 2.1e-001
 0.905942 0.000710 0.092413 0.000936
 0.062295 0.092413 0.000710 0.844582
 0.012343 0.986011 0.000710 0.000936
 0.000936 0.046414 0.942270 0.010380
 0.965385 0.010155 0.023525 0.000936
 0.000936 0.000710 0.000710 0.997644
 0.997644 0.000710 0.000710 0.000936
 0.000936 0.099530 0.718790 0.180743

MOTIF 4-AGGGCTGS STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.994013 0.001804 0.001804 0.002378
 0.002378 0.001804 0.993439 0.002378
 0.118539 0.001804 0.877278 0.002378
 0.002378 0.001804 0.993439 0.002378
 0.118539 0.819291 0.059792 0.002378
 0.060365 0.001804 0.001804 0.936026
 0.060365 0.001804 0.935452 0.002378
 0.002378 0.470995 0.524248 0.002378

MOTIF 5-AAACGTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.713898 0.142243 0.048234 0.095626
 0.854835 0.048234 0.048234 0.048697
 0.986223 0.010403 0.001456 0.001919
 0.001919 0.901000 0.095163 0.001919
 0.001919 0.001456 0.994707 0.001919
 0.001919 0.001456 0.001456 0.995170
 0.901614 0.048234 0.001456 0.048697
 0.807756 0.095163 0.001456 0.095626

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CHES-1-like.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CHES-1-like/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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