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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.339 C 0.161 G 0.161 T 0.339 

MOTIF 1-AGGTGGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.5e-002
 0.993483 0.001590 0.001590 0.003337
 0.003337 0.001590 0.991737 0.003337
 0.209904 0.001590 0.785169 0.003337
 0.003337 0.069892 0.001590 0.925181
 0.003337 0.001590 0.991737 0.003337
 0.003337 0.001590 0.923435 0.071638
 0.208902 0.757896 0.001590 0.031611
 0.003337 0.001590 0.991737 0.003337

MOTIF 2-AAMTAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.2e-001
 0.995026 0.001214 0.001214 0.002546
 0.742758 0.022791 0.231904 0.002546
 0.502563 0.493677 0.001214 0.002546
 0.002546 0.001214 0.001214 0.995026
 0.995026 0.001214 0.001214 0.002546
 0.712128 0.053421 0.231904 0.002546
 0.995026 0.001214 0.001214 0.002546
 0.002546 0.001214 0.001214 0.995026

MOTIF 3-AAACCAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 5.0e-001
 0.866102 0.052236 0.037047 0.044614
 0.911484 0.005530 0.066125 0.016860
 0.872704 0.011271 0.052236 0.063789
 0.060792 0.868003 0.035196 0.036008
 0.016660 0.873345 0.087255 0.022740
 0.721624 0.052236 0.026377 0.199763
 0.945492 0.011271 0.005530 0.037706
 0.907239 0.013489 0.026377 0.052895

MOTIF 4-CAAATGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 170 P= 8.8e-001
 0.030782 0.923764 0.014673 0.030782
 0.939873 0.014673 0.014673 0.030782
 0.939873 0.014673 0.014673 0.030782
 0.939873 0.014673 0.014673 0.030782
 0.030782 0.014673 0.014673 0.939873
 0.030782 0.014673 0.923764 0.030782
 0.939873 0.014673 0.014673 0.030782
 0.939873 0.014673 0.014673 0.030782

MOTIF 5-GAAACACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.001892 0.000902 0.950447 0.046760
 0.925525 0.016931 0.039623 0.017921
 0.918738 0.000902 0.000902 0.079459
 0.918862 0.039623 0.039623 0.001892
 0.067019 0.891466 0.000902 0.040613
 0.802135 0.039623 0.117629 0.040613
 0.022755 0.819191 0.039623 0.118430
 0.941554 0.039623 0.016931 0.001892

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9817.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG9817/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	2.18 seconds
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