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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.3 C 0.2 G 0.2 T 0.3 

MOTIF 1-GGTCACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 196 P= 2.2e-005
 0.006376 0.006277 0.987083 0.000265
 0.000265 0.000176 0.997483 0.002077
 0.000265 0.095657 0.075091 0.828988
 0.016781 0.964386 0.000176 0.018657
 0.974949 0.012398 0.006277 0.006376
 0.000265 0.919058 0.000176 0.080502
 0.931314 0.009328 0.003463 0.055895
 0.002790 0.939972 0.001343 0.055895

MOTIF 2-ATAAACAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 2.4e-001
 0.936409 0.018136 0.018136 0.027318
 0.027318 0.018136 0.018136 0.936409
 0.936409 0.018136 0.018136 0.027318
 0.936409 0.018136 0.018136 0.027318
 0.936409 0.018136 0.018136 0.027318
 0.027318 0.927227 0.018136 0.027318
 0.936409 0.018136 0.018136 0.027318
 0.936409 0.018136 0.018136 0.027318

MOTIF 3-GTTATCGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.004234 0.002811 0.988721 0.004234
 0.004234 0.002811 0.002811 0.990144
 0.004234 0.198461 0.002811 0.794494
 0.990144 0.002811 0.002811 0.004234
 0.004234 0.002811 0.002811 0.990144
 0.004234 0.988721 0.002811 0.004234
 0.004234 0.002811 0.988721 0.004234
 0.990144 0.002811 0.002811 0.004234

MOTIF 4-AATACCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 96 P= 5.0e-001
 0.742958 0.000465 0.000465 0.256113
 0.998371 0.000465 0.000465 0.000700
 0.000700 0.000465 0.032807 0.966028
 0.971215 0.027620 0.000465 0.000700
 0.038543 0.879227 0.065359 0.016871
 0.000700 0.833013 0.049135 0.117152
 0.855253 0.009164 0.078219 0.057364
 0.803462 0.014663 0.067609 0.114266

MOTIF 5-ATCAGCWG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.993927 0.001732 0.001732 0.002609
 0.002609 0.001732 0.001732 0.993927
 0.062884 0.872596 0.061910 0.002609
 0.873377 0.001732 0.001732 0.123159
 0.002609 0.001732 0.932872 0.062787
 0.002609 0.987524 0.001732 0.008135
 0.429674 0.001732 0.001732 0.566862
 0.002609 0.001732 0.932872 0.062787

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9797.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG9797/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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