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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.346 C 0.154 G 0.154 T 0.346 

MOTIF 1-ACTTCCCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.992513 0.001766 0.001766 0.003956
 0.003956 0.911011 0.081078 0.003956
 0.003956 0.001766 0.001766 0.992513
 0.003956 0.081078 0.081078 0.833889
 0.003956 0.929055 0.001766 0.065224
 0.083268 0.831699 0.001766 0.083268
 0.242660 0.618220 0.001766 0.137355
 0.083268 0.001766 0.001766 0.913201

MOTIF 2-TCATTTTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.0e-001
 0.017043 0.100292 0.031685 0.850980
 0.019702 0.887629 0.003506 0.089163
 0.846375 0.013521 0.013521 0.126584
 0.036300 0.062779 0.062779 0.838141
 0.014377 0.013521 0.031685 0.940418
 0.001546 0.000690 0.013521 0.984243
 0.032541 0.031685 0.006618 0.929156
 0.023913 0.183472 0.764501 0.028113

MOTIF 3-AAATATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 178 P= 3.9e-001
 0.815147 0.045286 0.024430 0.115137
 0.851451 0.047689 0.053507 0.047353
 0.713623 0.135513 0.067947 0.082917
 0.003948 0.048048 0.048368 0.899636
 0.899636 0.048368 0.048048 0.003948
 0.082917 0.067947 0.135513 0.713623
 0.047353 0.053507 0.047689 0.851451
 0.115137 0.024430 0.045286 0.815147

MOTIF 4-CACTGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.003253 0.926807 0.066686 0.003253
 0.928608 0.001452 0.066686 0.003253
 0.003253 0.992041 0.001452 0.003253
 0.265454 0.001452 0.001452 0.731642
 0.003253 0.001452 0.992041 0.003253
 0.836160 0.001452 0.132130 0.030258
 0.003253 0.001452 0.992041 0.003253
 0.928608 0.001452 0.066686 0.003253

MOTIF 5-ATCTAMAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.992279 0.001821 0.001821 0.004080
 0.004080 0.001821 0.001821 0.992279
 0.004080 0.990020 0.001821 0.004080
 0.004080 0.001821 0.001821 0.992279
 0.992279 0.001821 0.001821 0.004080
 0.580643 0.413456 0.001821 0.004080
 0.910481 0.083618 0.001821 0.004080
 0.004080 0.001821 0.001821 0.992279

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9727.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG9727/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.85 seconds
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