********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.299 C 0.201 G 0.201 T 0.299 

MOTIF 1-TATCGATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.2e-001
 0.263148 0.076052 0.010128 0.650671
 0.954286 0.042618 0.001246 0.001850
 0.014840 0.065826 0.001246 0.918089
 0.001850 0.995054 0.001246 0.001850
 0.001850 0.001246 0.995054 0.001850
 0.918089 0.001246 0.065826 0.014840
 0.001850 0.001246 0.042618 0.954286
 0.650671 0.010128 0.076052 0.263148

MOTIF 2-GTTGCCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.001187 0.028420 0.969206 0.001187
 0.056340 0.000799 0.055952 0.886908
 0.056340 0.028331 0.000799 0.914529
 0.056340 0.000799 0.934257 0.008604
 0.016022 0.871329 0.111462 0.001187
 0.056340 0.902744 0.028331 0.012584
 0.997215 0.000799 0.000799 0.001187
 0.168266 0.077587 0.670097 0.084050

MOTIF 3-AATGTGTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.990098 0.002841 0.002841 0.004220
 0.990098 0.002841 0.002841 0.004220
 0.004220 0.002841 0.002841 0.990098
 0.004220 0.002841 0.988719 0.004220
 0.102107 0.002841 0.002841 0.892210
 0.200310 0.002841 0.792629 0.004220
 0.004220 0.002841 0.002841 0.990098
 0.004220 0.002841 0.988719 0.004220

MOTIF 4-CGATAGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.027164 0.927382 0.018291 0.027164
 0.027164 0.018291 0.927382 0.027164
 0.936255 0.018291 0.018291 0.027164
 0.027164 0.018291 0.018291 0.936255
 0.936255 0.018291 0.018291 0.027164
 0.027164 0.018291 0.927382 0.027164
 0.027164 0.018291 0.927382 0.027164
 0.027164 0.927382 0.018291 0.027164

MOTIF 5-CATTCCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003262 0.991280 0.002196 0.003262
 0.992345 0.002196 0.002196 0.003262
 0.003262 0.002196 0.002196 0.992345
 0.078930 0.002196 0.002196 0.916677
 0.003262 0.991280 0.002196 0.003262
 0.003262 0.991280 0.002196 0.003262
 0.688205 0.306337 0.002196 0.003262
 0.840765 0.002196 0.002196 0.154842

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9609.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG9609/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n05.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.58 seconds
********************************************************************************