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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-VTTACGTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 153 P= 3.1e-002
 0.279003 0.422364 0.279504 0.019129
 0.036509 0.000349 0.000349 0.962793
 0.011898 0.045398 0.000349 0.942355
 0.967649 0.011969 0.000349 0.020033
 0.000489 0.998672 0.000349 0.000489
 0.012128 0.000349 0.987034 0.000489
 0.000489 0.000349 0.011969 0.987193
 0.605676 0.159886 0.000349 0.234089

MOTIF 2-ACACTGTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.859073 0.092272 0.001362 0.047293
 0.001911 0.994815 0.001362 0.001911
 0.949982 0.046744 0.001362 0.001911
 0.092821 0.767024 0.092862 0.047293
 0.047513 0.001362 0.046744 0.904381
 0.047293 0.046744 0.885265 0.020698
 0.001911 0.020149 0.092272 0.885668
 0.047293 0.001362 0.949434 0.001911

MOTIF 3-GCGAYAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.001513 0.001079 0.923908 0.073500
 0.196183 0.621373 0.037072 0.145372
 0.001513 0.001079 0.995894 0.001513
 0.924400 0.001079 0.037015 0.037507
 0.145487 0.447472 0.015955 0.391086
 0.735971 0.087826 0.051891 0.124312
 0.073500 0.001079 0.887972 0.037449
 0.924458 0.037015 0.001079 0.037449

MOTIF 4-AAGAAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.817122 0.001330 0.001330 0.180218
 0.683209 0.001330 0.045631 0.269830
 0.001866 0.001330 0.994939 0.001866
 0.951173 0.001330 0.045631 0.001866
 0.924360 0.045631 0.019669 0.010339
 0.906872 0.045631 0.001330 0.046167
 0.951173 0.001330 0.045631 0.001866
 0.001866 0.001330 0.001330 0.995474

MOTIF 5-ACAGCTGM STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.847086 0.001301 0.044644 0.106968
 0.001825 0.890140 0.106210 0.001825
 0.803838 0.193035 0.001301 0.001825
 0.131994 0.001301 0.821536 0.045168
 0.001825 0.951705 0.001301 0.045168
 0.001825 0.001301 0.001301 0.995572
 0.001825 0.001301 0.995048 0.001825
 0.481980 0.514894 0.001301 0.001825

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG9437.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG9437/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	2.12 seconds
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