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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.301 C 0.199 G 0.199 T 0.301 

MOTIF 1-AGATGGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.5e-002
 0.994606 0.001533 0.001533 0.002328
 0.002328 0.001533 0.993810 0.002328
 0.994606 0.001533 0.001533 0.002328
 0.055857 0.001533 0.162897 0.779714
 0.055857 0.001533 0.940282 0.002328
 0.055857 0.001533 0.670468 0.272142
 0.024487 0.971651 0.001533 0.002328
 0.002328 0.001533 0.993810 0.002328

MOTIF 2-TGAATGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.002011 0.001324 0.140471 0.856194
 0.002011 0.001324 0.994654 0.002011
 0.995341 0.001324 0.001324 0.002011
 0.995341 0.001324 0.001324 0.002011
 0.002011 0.205545 0.001324 0.791120
 0.002011 0.001324 0.994654 0.002011
 0.002011 0.763339 0.001324 0.233326
 0.559657 0.232639 0.001324 0.206380

MOTIF 3-AGTGTAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 9.7e-001
 0.910157 0.073788 0.004709 0.011346
 0.037828 0.043509 0.907025 0.011638
 0.082970 0.009478 0.101009 0.806543
 0.009796 0.064854 0.920323 0.005027
 0.022345 0.072601 0.022027 0.883027
 0.701114 0.202684 0.022027 0.074175
 0.734453 0.086475 0.077883 0.101189
 0.794385 0.022027 0.063843 0.119745

MOTIF 4-ATCGSAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.780948 0.072592 0.002021 0.144439
 0.003070 0.002021 0.002021 0.992888
 0.003070 0.991840 0.002021 0.003070
 0.144439 0.002021 0.850470 0.003070
 0.073641 0.285674 0.567044 0.073641
 0.851746 0.072592 0.072592 0.003070
 0.003070 0.002021 0.991840 0.003070
 0.003070 0.991840 0.002021 0.003070

MOTIF 5-GCACTGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.099795 0.001396 0.799014 0.099795
 0.050879 0.896845 0.001396 0.050879
 0.926144 0.050155 0.001396 0.022305
 0.022305 0.925419 0.001396 0.050879
 0.009364 0.050155 0.001396 0.939085
 0.050879 0.050155 0.896845 0.002121
 0.240100 0.001396 0.756383 0.002121
 0.090830 0.001396 0.905652 0.002121

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8944.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG8944/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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