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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.329 C 0.171 G 0.171 T 0.329 

MOTIF 1-TAAAYAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 118 P= 3.6e-002
 0.001234 0.000642 0.000642 0.997483
 0.981882 0.016243 0.000642 0.001234
 0.872345 0.125779 0.000642 0.001234
 0.862098 0.055798 0.080870 0.001234
 0.001234 0.391812 0.067537 0.539417
 0.943563 0.000642 0.054561 0.001234
 0.860079 0.013288 0.000642 0.125991
 0.889212 0.000642 0.013642 0.096504

MOTIF 2-CGCACACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 9.5e-001
 0.038317 0.907320 0.037484 0.016879
 0.063263 0.037484 0.824355 0.074898
 0.038317 0.922463 0.037484 0.001736
 0.772535 0.037484 0.037484 0.152497
 0.001736 0.885882 0.000903 0.111479
 0.809116 0.000903 0.037484 0.152497
 0.016879 0.834040 0.037484 0.111597
 0.111833 0.775668 0.037484 0.075016

MOTIF 3-GGCCAWCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.001683 0.000876 0.889227 0.108214
 0.001683 0.071934 0.889227 0.037155
 0.001683 0.853526 0.000876 0.143916
 0.001683 0.711637 0.107407 0.179273
 0.961093 0.000876 0.000876 0.037155
 0.428209 0.142879 0.178694 0.250218
 0.108616 0.853353 0.036348 0.001683
 0.961093 0.000876 0.000876 0.037155

MOTIF 4-CCATCACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.169001 0.754692 0.000460 0.075847
 0.019510 0.885895 0.037712 0.056883
 0.856480 0.041275 0.037712 0.064533
 0.019510 0.075085 0.037742 0.867663
 0.030783 0.904284 0.056339 0.008594
 0.539187 0.157542 0.082796 0.220475
 0.150074 0.714636 0.074965 0.060325
 0.038136 0.140337 0.075025 0.746502

MOTIF 5-AACWACAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.0e+000
 0.993796 0.001582 0.001582 0.003040
 0.993796 0.001582 0.001582 0.003040
 0.003040 0.992338 0.001582 0.003040
 0.536057 0.001582 0.073428 0.388933
 0.993796 0.001582 0.001582 0.003040
 0.003040 0.992338 0.001582 0.003040
 0.865442 0.001582 0.001582 0.131395
 0.993796 0.001582 0.001582 0.003040

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8924.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG8924/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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