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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.357 C 0.143 G 0.143 T 0.357 

MOTIF 1-ATTTTTAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 112 P= 3.8e-001
 0.996350 0.000812 0.000812 0.002027
 0.002027 0.000812 0.053832 0.943329
 0.126990 0.218868 0.086668 0.567474
 0.002027 0.164509 0.024632 0.808832
 0.002027 0.040160 0.234501 0.723312
 0.002027 0.000812 0.000812 0.996350
 0.996350 0.000812 0.000812 0.002027
 0.996350 0.000812 0.000812 0.002027

MOTIF 2-AAATGAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.941545 0.013000 0.013000 0.032455
 0.941545 0.013000 0.013000 0.032455
 0.941545 0.013000 0.013000 0.032455
 0.032455 0.013000 0.013000 0.941545
 0.032455 0.013000 0.922091 0.032455
 0.941545 0.013000 0.013000 0.032455
 0.941545 0.013000 0.013000 0.032455
 0.032455 0.013000 0.922091 0.032455

MOTIF 3-CAACAAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.003792 0.990896 0.001519 0.003792
 0.845903 0.075152 0.075152 0.003792
 0.962688 0.001519 0.001519 0.034274
 0.003792 0.990896 0.001519 0.003792
 0.993169 0.001519 0.001519 0.003792
 0.845903 0.001519 0.075152 0.077426
 0.151296 0.075152 0.769760 0.003792
 0.299753 0.621303 0.001519 0.077426

MOTIF 4-GAAATCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.001962 0.000786 0.988001 0.009250
 0.916607 0.016559 0.000786 0.066048
 0.920138 0.000786 0.000786 0.078289
 0.920261 0.000786 0.038888 0.040065
 0.040065 0.000786 0.038888 0.920261
 0.001962 0.957187 0.000786 0.040065
 0.920138 0.000786 0.077113 0.001962
 0.067613 0.192531 0.507425 0.232431

MOTIF 5-AACTACAW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.940041 0.001132 0.056001 0.002826
 0.994910 0.001132 0.001132 0.002826
 0.002826 0.993216 0.001132 0.002826
 0.002826 0.001132 0.166270 0.829772
 0.994910 0.001132 0.001132 0.002826
 0.002826 0.993216 0.001132 0.002826
 0.664632 0.056001 0.056001 0.223366
 0.334711 0.001132 0.001132 0.663025

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8632.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG8632/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.50 seconds
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