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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.269 C 0.231 G 0.231 T 0.269 

MOTIF 1-GAGAGGGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 4.8e-002
 0.011429 0.000708 0.965826 0.022036
 0.986331 0.012139 0.000708 0.000822
 0.043319 0.021922 0.933937 0.000822
 0.831987 0.059724 0.000708 0.107580
 0.064670 0.050433 0.862860 0.022036
 0.054703 0.074550 0.849097 0.021651
 0.022070 0.029235 0.926658 0.022036
 0.887065 0.043499 0.004766 0.064670

MOTIF 2-ACTCGCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 6.4e-001
 0.821057 0.072911 0.072247 0.033784
 0.023326 0.839884 0.091008 0.045782
 0.095175 0.000750 0.002597 0.901478
 0.100134 0.821511 0.032501 0.045854
 0.079157 0.055029 0.833156 0.032658
 0.000870 0.898391 0.010046 0.090693
 0.907735 0.023205 0.011978 0.057082
 0.000870 0.952562 0.023205 0.023362

MOTIF 3-GCAACAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 6.7e-001
 0.272414 0.072828 0.623997 0.030762
 0.001148 0.967102 0.030603 0.001148
 0.917451 0.000989 0.050798 0.030762
 0.915202 0.013248 0.070402 0.001148
 0.001148 0.984457 0.013248 0.001148
 0.955002 0.030603 0.013248 0.001148
 0.877843 0.000989 0.090407 0.030762
 0.001148 0.946907 0.050798 0.001148

MOTIF 4-GATTTTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 8.3e-001
 0.001139 0.076513 0.832783 0.089565
 0.790283 0.030362 0.030362 0.148994
 0.006758 0.030362 0.000981 0.961899
 0.030519 0.030362 0.000981 0.938138
 0.001139 0.000981 0.000981 0.996900
 0.001139 0.030362 0.059837 0.908663
 0.001139 0.996742 0.000981 0.001139
 0.119231 0.731271 0.059932 0.089565

MOTIF 5-CGCTGCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 8.3e-001
 0.001259 0.909275 0.055722 0.033744
 0.001259 0.001084 0.800755 0.196902
 0.131407 0.833765 0.001084 0.033744
 0.001259 0.170653 0.001084 0.827003
 0.001259 0.037510 0.927488 0.033744
 0.001259 0.963913 0.001084 0.033744
 0.001259 0.893948 0.033569 0.071224
 0.066333 0.014532 0.852802 0.066333

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8478.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG8478/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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