********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.309 C 0.191 G 0.191 T 0.309 

MOTIF 1-GGTCACCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 4.9e-002
 0.028055 0.017400 0.926491 0.028055
 0.028055 0.017400 0.926491 0.028055
 0.028055 0.017400 0.017400 0.937145
 0.028055 0.926491 0.017400 0.028055
 0.937145 0.017400 0.017400 0.028055
 0.028055 0.926491 0.017400 0.028055
 0.028055 0.926491 0.017400 0.028055
 0.937145 0.017400 0.017400 0.028055

MOTIF 2-AAAGGGWA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 7.6e-001
 0.922707 0.000520 0.019366 0.057407
 0.925858 0.000520 0.057179 0.016442
 0.892485 0.106156 0.000520 0.000839
 0.038647 0.000520 0.773067 0.187766
 0.000839 0.290097 0.651687 0.057376
 0.000839 0.111388 0.860287 0.027486
 0.578518 0.000520 0.038212 0.382750
 0.763655 0.027168 0.000520 0.208656

MOTIF 3-ATAAATTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 9.9e-001
 0.906512 0.089789 0.001416 0.002283
 0.002283 0.001416 0.001416 0.994884
 0.892141 0.001416 0.104160 0.002283
 0.789231 0.207069 0.001416 0.002283
 0.788982 0.207319 0.001416 0.002283
 0.002283 0.104160 0.001416 0.892141
 0.002283 0.001416 0.001416 0.994884
 0.994884 0.001416 0.001416 0.002283

MOTIF 4-CGATTCCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.150872 0.843814 0.002034 0.003280
 0.003280 0.002034 0.843814 0.150872
 0.918974 0.075712 0.002034 0.003280
 0.076957 0.075712 0.075712 0.771619
 0.003280 0.002034 0.002034 0.992651
 0.003280 0.991405 0.002034 0.003280
 0.003280 0.960905 0.032534 0.003280
 0.003280 0.075830 0.149626 0.771264

MOTIF 5-GCCAACTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.001533 0.138776 0.616937 0.242754
 0.001533 0.977433 0.000951 0.020083
 0.001533 0.995984 0.000951 0.001533
 0.751168 0.000951 0.104347 0.143534
 0.748481 0.035435 0.041964 0.174119
 0.001533 0.995984 0.000951 0.001533
 0.143645 0.000951 0.069808 0.785596
 0.242866 0.000951 0.754651 0.001533

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8319.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG8319/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n07.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.60 seconds
********************************************************************************