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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-ACAAACTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 6.9e-002
 0.977268 0.000699 0.021254 0.000779
 0.000779 0.908395 0.069563 0.021263
 0.614636 0.000699 0.125212 0.259453
 0.982000 0.016523 0.000699 0.000779
 0.953453 0.021183 0.023668 0.001696
 0.035233 0.938887 0.021183 0.004697
 0.021296 0.000699 0.025544 0.952460
 0.041880 0.009179 0.948162 0.000779

MOTIF 2-ACTGAATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 123 P= 1.7e-001
 0.920700 0.034359 0.000687 0.044253
 0.000766 0.828557 0.169910 0.000766
 0.026338 0.134506 0.136832 0.702324
 0.077547 0.020897 0.860501 0.041056
 0.906642 0.008817 0.000687 0.083853
 0.861157 0.000687 0.137390 0.000766
 0.000766 0.030904 0.136794 0.831536
 0.000766 0.000687 0.997781 0.000766

MOTIF 3-ATTGACGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 84 P= 3.3e-001
 0.938622 0.035467 0.007813 0.018099
 0.105269 0.029956 0.021040 0.843735
 0.018099 0.018031 0.181805 0.782065
 0.000663 0.002196 0.926678 0.070463
 0.966154 0.006407 0.009313 0.018127
 0.001444 0.760790 0.070934 0.166833
 0.011125 0.029921 0.958291 0.000663
 0.020214 0.042891 0.936232 0.000663

MOTIF 4-CATTTGGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.001427 0.995868 0.001279 0.001427
 0.792566 0.016808 0.001279 0.189346
 0.001427 0.001279 0.001279 0.996015
 0.038938 0.001279 0.226711 0.733072
 0.001427 0.227075 0.001279 0.770219
 0.001427 0.151688 0.845459 0.001427
 0.001427 0.113934 0.883213 0.001427
 0.001427 0.001279 0.995868 0.001427

MOTIF 5-RGYTARCY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.381933 0.001978 0.497794 0.118295
 0.002206 0.001978 0.993611 0.002206
 0.089203 0.410704 0.030977 0.469116
 0.002206 0.001978 0.001978 0.993838
 0.993838 0.001978 0.001978 0.002206
 0.469116 0.030977 0.410704 0.089203
 0.002206 0.993611 0.001978 0.002206
 0.118295 0.497794 0.001978 0.381933

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8281.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG8281/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.68 seconds
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