********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.352 C 0.148 G 0.148 T 0.352 

MOTIF 1-GTCCACCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 2.4e-001
 0.001565 0.031516 0.965353 0.001565
 0.001565 0.000661 0.062571 0.935203
 0.001565 0.921359 0.000661 0.076416
 0.001565 0.996209 0.000661 0.001565
 0.966258 0.031516 0.000661 0.001565
 0.001565 0.996209 0.000661 0.001565
 0.014338 0.702105 0.000661 0.282896
 0.032421 0.934498 0.000661 0.032421

MOTIF 2-ATCAAATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 8.8e-001
 0.917614 0.027202 0.027202 0.027983
 0.047238 0.053919 0.000570 0.898273
 0.065042 0.742007 0.065174 0.127777
 0.879957 0.027202 0.091490 0.001351
 0.809369 0.011595 0.064858 0.114178
 0.851008 0.079293 0.000570 0.069128
 0.001351 0.080551 0.011595 0.906503
 0.001351 0.013886 0.983412 0.001351

MOTIF 3-AACTCATG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.943300 0.001110 0.001110 0.054480
 0.943300 0.001110 0.052960 0.002630
 0.089838 0.742900 0.052960 0.114303
 0.012547 0.052960 0.001110 0.933383
 0.002630 0.941780 0.052960 0.002630
 0.921836 0.022574 0.001110 0.054480
 0.054480 0.052960 0.001110 0.891451
 0.211034 0.001110 0.698018 0.089838

MOTIF 4-CTTTAGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.013592 0.959106 0.001202 0.026100
 0.002849 0.001202 0.001202 0.994746
 0.002849 0.001202 0.001202 0.994746
 0.002849 0.001202 0.057368 0.938580
 0.938580 0.057368 0.001202 0.002849
 0.059015 0.001202 0.824422 0.115361
 0.059015 0.711183 0.226954 0.002849
 0.285496 0.001202 0.654287 0.059015

MOTIF 5-AGGTCAYA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.993401 0.001510 0.001510 0.003578
 0.003578 0.001510 0.991334 0.003578
 0.003578 0.001510 0.991334 0.003578
 0.003578 0.001510 0.001510 0.993401
 0.003578 0.991334 0.001510 0.003578
 0.781102 0.213810 0.001510 0.003578
 0.074117 0.355573 0.072049 0.498261
 0.711018 0.142588 0.001510 0.144883

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG8159.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG8159/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.72 seconds
********************************************************************************