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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.37 C 0.13 G 0.13 T 0.37 

MOTIF 1-TCAATTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.2e-001
 0.197461 0.197654 0.056911 0.547974
 0.002000 0.995300 0.000700 0.002000
 0.977882 0.019417 0.000700 0.002000
 0.763826 0.120810 0.000700 0.114663
 0.114663 0.000700 0.120810 0.763826
 0.002000 0.000700 0.019417 0.977882
 0.002000 0.000700 0.995300 0.002000
 0.547974 0.056911 0.197654 0.197461

MOTIF 2-AAACGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 78 P= 6.3e-001
 0.923239 0.028457 0.000523 0.047780
 0.907391 0.012087 0.000523 0.080000
 0.918133 0.000523 0.068288 0.013056
 0.013177 0.863975 0.009286 0.113561
 0.018497 0.041468 0.827094 0.112942
 0.786535 0.001773 0.047507 0.164184
 0.801113 0.107635 0.056482 0.034770
 0.758490 0.084417 0.056392 0.100701

MOTIF 3-AATGTDTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.995628 0.000900 0.000900 0.002571
 0.995628 0.000900 0.000900 0.002571
 0.002571 0.000900 0.000900 0.995628
 0.002571 0.000900 0.993958 0.002571
 0.173022 0.000900 0.000900 0.825177
 0.367227 0.000900 0.241823 0.390050
 0.243804 0.000900 0.000900 0.754395
 0.002571 0.993958 0.000900 0.002571

MOTIF 4-AGTTTGCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 8.8e-001
 0.886582 0.001015 0.055260 0.057143
 0.002898 0.001015 0.993189 0.002898
 0.002898 0.055260 0.001015 0.940827
 0.057143 0.055260 0.001015 0.886582
 0.057143 0.055260 0.001015 0.886582
 0.086706 0.055260 0.855136 0.002898
 0.096363 0.899724 0.001015 0.002898
 0.111562 0.001015 0.055260 0.832163

MOTIF 5-CACACTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 8.8e-001
 0.033664 0.920882 0.011791 0.033664
 0.942755 0.011791 0.011791 0.033664
 0.033664 0.920882 0.011791 0.033664
 0.942755 0.011791 0.011791 0.033664
 0.033664 0.920882 0.011791 0.033664
 0.033664 0.011791 0.011791 0.942755
 0.033664 0.920882 0.011791 0.033664
 0.033664 0.920882 0.011791 0.033664

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7839.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG7839/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.47 seconds
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