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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.308 C 0.192 G 0.192 T 0.308 

MOTIF 1-WAKSSMTW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.547540 0.118545 0.004109 0.329807
 0.983700 0.000345 0.000916 0.015039
 0.088612 0.000345 0.425372 0.485671
 0.003127 0.510112 0.320205 0.166556
 0.166556 0.320205 0.510112 0.003127
 0.485671 0.425372 0.000345 0.088612
 0.015039 0.000916 0.000345 0.983700
 0.329807 0.004109 0.118545 0.547540

MOTIF 2-ACACTGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.993516 0.001800 0.001800 0.002884
 0.002884 0.992432 0.001800 0.002884
 0.733151 0.066734 0.001800 0.198315
 0.002884 0.992432 0.001800 0.002884
 0.002884 0.001800 0.014219 0.981097
 0.002884 0.001800 0.992432 0.002884
 0.993516 0.001800 0.001800 0.002884
 0.602443 0.131877 0.262795 0.002884

MOTIF 3-GWRAGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 8.3e-001
 0.001779 0.001110 0.995332 0.001779
 0.658110 0.001110 0.001110 0.339670
 0.419660 0.001110 0.420270 0.158960
 0.996001 0.001110 0.001110 0.001779
 0.001779 0.001110 0.995332 0.001779
 0.996001 0.001110 0.001110 0.001779
 0.820058 0.001110 0.001110 0.177722
 0.996001 0.001110 0.001110 0.001779

MOTIF 4-ATAAGTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 8.8e-001
 0.937082 0.017464 0.017464 0.027991
 0.027991 0.017464 0.017464 0.937082
 0.937082 0.017464 0.017464 0.027991
 0.937082 0.017464 0.017464 0.027991
 0.027991 0.017464 0.926555 0.027991
 0.027991 0.017464 0.017464 0.937082
 0.937082 0.017464 0.017464 0.027991
 0.937082 0.017464 0.017464 0.027991

MOTIF 5-AACWAATT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.991583 0.002336 0.002336 0.003744
 0.991583 0.002336 0.002336 0.003744
 0.003744 0.990175 0.002336 0.003744
 0.638935 0.002336 0.002336 0.356392
 0.991583 0.002336 0.002336 0.003744
 0.991583 0.002336 0.002336 0.003744
 0.003744 0.002336 0.002336 0.991583
 0.003744 0.002336 0.002336 0.991583

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7786.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG7786/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.72 seconds
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