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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.301 C 0.199 G 0.199 T 0.301 

MOTIF 1-ATAATTAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 164 P= 2.0e-003
 0.516990 0.203738 0.098715 0.180557
 0.284522 0.000393 0.000393 0.714692
 0.998616 0.000393 0.000393 0.000597
 0.961840 0.019165 0.007791 0.011204
 0.000597 0.015789 0.006077 0.977537
 0.000597 0.033700 0.020509 0.945194
 0.998616 0.000393 0.000393 0.000597
 0.890587 0.000393 0.089960 0.019060

MOTIF 2-CATATACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.001562 0.955593 0.001028 0.041817
 0.960481 0.036929 0.001028 0.001562
 0.001562 0.001028 0.108846 0.888564
 0.852257 0.036929 0.109252 0.001562
 0.001562 0.001028 0.144862 0.852548
 0.852548 0.144862 0.001028 0.001562
 0.001562 0.690114 0.018978 0.289346
 0.960481 0.001028 0.001028 0.037462

MOTIF 3-CATGCGAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.001858 0.866521 0.129764 0.001858
 0.764332 0.147168 0.086642 0.001858
 0.001858 0.086642 0.001223 0.910278
 0.147666 0.043932 0.721126 0.087276
 0.001858 0.977381 0.001223 0.019538
 0.233591 0.001223 0.677910 0.087276
 0.824722 0.001223 0.172197 0.001858
 0.001858 0.995061 0.001223 0.001858

MOTIF 4-AAAATTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.991444 0.002431 0.002431 0.003693
 0.991444 0.002431 0.002431 0.003693
 0.991444 0.002431 0.002431 0.003693
 0.991444 0.002431 0.002431 0.003693
 0.003693 0.002431 0.145236 0.848640
 0.003693 0.002431 0.002431 0.991444
 0.991444 0.002431 0.002431 0.003693
 0.003693 0.002431 0.990182 0.003693

MOTIF 5-ACACRCAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.0e+000
 0.995568 0.001259 0.001259 0.001913
 0.001913 0.965597 0.001259 0.031231
 0.797059 0.001259 0.029524 0.172158
 0.001913 0.950938 0.001259 0.045890
 0.488959 0.027930 0.304865 0.178247
 0.001913 0.906890 0.001259 0.089938
 0.995568 0.001259 0.001259 0.001913
 0.001913 0.994915 0.001259 0.001913

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7745.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG7745/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.97 seconds
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