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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.307 C 0.193 G 0.193 T 0.307 

MOTIF 1-ATAYRTAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.2e-001
 0.913328 0.035001 0.035001 0.016669
 0.002942 0.001842 0.001842 0.993374
 0.993374 0.001842 0.001842 0.002942
 0.002942 0.496665 0.068268 0.432125
 0.432125 0.068268 0.496665 0.002942
 0.002942 0.001842 0.001842 0.993374
 0.993374 0.001842 0.001842 0.002942
 0.016669 0.035001 0.035001 0.913328

MOTIF 2-WCKCAAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.662967 0.001831 0.001831 0.333371
 0.002924 0.992321 0.001831 0.002924
 0.002924 0.001831 0.661874 0.333371
 0.134975 0.728219 0.001831 0.134975
 0.993414 0.001831 0.001831 0.002924
 0.993414 0.001831 0.001831 0.002924
 0.002924 0.001831 0.992321 0.002924
 0.861575 0.067750 0.001831 0.068844

MOTIF 3-AAAGGCCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 9.5e-001
 0.995374 0.001286 0.001286 0.002054
 0.995374 0.001286 0.001286 0.002054
 0.744598 0.252061 0.001286 0.002054
 0.002054 0.093899 0.855687 0.048361
 0.048435 0.001286 0.882749 0.067530
 0.094816 0.809231 0.001286 0.094667
 0.094816 0.901844 0.001286 0.002054
 0.188177 0.093899 0.001286 0.716638

MOTIF 4-CTTAAATC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003635 0.990456 0.002275 0.003635
 0.003635 0.002275 0.248852 0.745239
 0.003635 0.002275 0.002275 0.991815
 0.991815 0.002275 0.002275 0.003635
 0.745767 0.166395 0.084203 0.003635
 0.991815 0.002275 0.002275 0.003635
 0.003635 0.002275 0.002275 0.991815
 0.003635 0.990456 0.002275 0.003635

MOTIF 5-GTAGTCAW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.002737 0.063420 0.931105 0.002737
 0.002737 0.001714 0.001714 0.993835
 0.932128 0.001714 0.001714 0.064444
 0.002737 0.001714 0.992811 0.002737
 0.002737 0.001714 0.187430 0.808118
 0.002737 0.992811 0.001714 0.002737
 0.932128 0.063420 0.001714 0.002737
 0.621597 0.063420 0.001714 0.313269

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7368.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG7368/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.87 seconds
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