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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.285 C 0.215 G 0.215 T 0.285 

MOTIF 1-CATTTCCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 5.5e-002
 0.000742 0.925364 0.073153 0.000742
 0.685037 0.036857 0.277364 0.000742
 0.008218 0.172530 0.008038 0.811214
 0.000742 0.000561 0.008038 0.990660
 0.000742 0.004016 0.018622 0.976621
 0.010473 0.951987 0.036798 0.000742
 0.000742 0.997956 0.000561 0.000742
 0.031118 0.030938 0.921320 0.016625

MOTIF 2-GGCCATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.0e-001
 0.001362 0.067687 0.626911 0.304040
 0.067803 0.100854 0.829981 0.001362
 0.001362 0.789840 0.001031 0.207768
 0.001362 0.996246 0.001031 0.001362
 0.863587 0.001031 0.134021 0.001362
 0.001362 0.001031 0.001031 0.996577
 0.996577 0.001031 0.001031 0.001362
 0.996577 0.001031 0.001031 0.001362

MOTIF 3-AGAGGAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.0e-001
 0.942615 0.001616 0.001616 0.054152
 0.002136 0.001616 0.994112 0.002136
 0.921082 0.001616 0.053633 0.023669
 0.023669 0.053633 0.899029 0.023669
 0.158688 0.001616 0.837559 0.002136
 0.890431 0.001616 0.001616 0.106336
 0.786062 0.053633 0.001616 0.158688
 0.002136 0.105817 0.147924 0.744123

MOTIF 4-ACGCACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.873148 0.001285 0.023564 0.102003
 0.001698 0.995320 0.001285 0.001698
 0.001698 0.042634 0.847671 0.107998
 0.001698 0.953971 0.001285 0.043047
 0.995732 0.001285 0.001285 0.001698
 0.167895 0.787706 0.001285 0.043113
 0.954383 0.001285 0.001285 0.043047
 0.043113 0.811937 0.126135 0.018815

MOTIF 5-AAAATGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.934964 0.019582 0.019582 0.025873
 0.934964 0.019582 0.019582 0.025873
 0.934964 0.019582 0.019582 0.025873
 0.934964 0.019582 0.019582 0.025873
 0.025873 0.019582 0.019582 0.934964
 0.025873 0.019582 0.928673 0.025873
 0.025873 0.019582 0.928673 0.025873
 0.025873 0.928673 0.019582 0.025873

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7271.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG7271/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.90 seconds
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