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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.34 C 0.16 G 0.16 T 0.34 

MOTIF 1-AGCAAACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 2.3e-001
 0.845082 0.000699 0.152736 0.001483
 0.001483 0.034619 0.911535 0.052363
 0.058207 0.604093 0.061200 0.276500
 0.966868 0.000699 0.030950 0.001483
 0.997119 0.000699 0.000699 0.001483
 0.845426 0.030950 0.122141 0.001483
 0.001483 0.867090 0.000699 0.130728
 0.997119 0.000699 0.000699 0.001483

MOTIF 2-ACGGCGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.901863 0.002071 0.091674 0.004393
 0.274067 0.719469 0.002071 0.004393
 0.183886 0.002071 0.809650 0.004393
 0.004393 0.002071 0.899541 0.093995
 0.004393 0.989144 0.002071 0.004393
 0.183886 0.002071 0.809650 0.004393
 0.004393 0.002071 0.989144 0.004393
 0.093995 0.899541 0.002071 0.004393

MOTIF 3-AAATATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 6.5e-001
 0.888828 0.021050 0.038695 0.051426
 0.890990 0.072122 0.001146 0.035743
 0.940599 0.007559 0.044766 0.007076
 0.001648 0.087496 0.029043 0.881813
 0.881813 0.029043 0.087496 0.001648
 0.007076 0.044766 0.007559 0.940599
 0.035743 0.001146 0.072122 0.890990
 0.051426 0.038695 0.021050 0.888828

MOTIF 4-TAAATGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 7.0e-001
 0.001576 0.000743 0.000743 0.996938
 0.903424 0.065134 0.018062 0.013380
 0.829253 0.065134 0.104037 0.001576
 0.942874 0.000743 0.054807 0.001576
 0.001576 0.000743 0.032887 0.964794
 0.001576 0.000743 0.996106 0.001576
 0.882159 0.000743 0.032887 0.084211
 0.789941 0.006891 0.065134 0.138034

MOTIF 5-ACTAAACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.860258 0.068236 0.001541 0.069964
 0.003270 0.991919 0.001541 0.003270
 0.003270 0.001541 0.029151 0.966038
 0.793349 0.135145 0.001541 0.069964
 0.993648 0.001541 0.001541 0.003270
 0.793564 0.068236 0.068236 0.069964
 0.003270 0.991919 0.001541 0.003270
 0.726440 0.135145 0.135145 0.003270

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG7101.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG7101/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	1.98 seconds
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