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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-AGMGGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 6.9e-002
 0.997291 0.000893 0.000893 0.000922
 0.071724 0.000893 0.926460 0.000922
 0.617146 0.355866 0.026065 0.000922
 0.183714 0.241168 0.498436 0.076682
 0.000922 0.000893 0.997262 0.000922
 0.000922 0.997262 0.000893 0.000922
 0.909108 0.000893 0.089076 0.000922
 0.051347 0.162834 0.784896 0.000922

MOTIF 2-ACTTTCRC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 5.0e-001
 0.675559 0.193306 0.000682 0.130453
 0.000704 0.978684 0.019907 0.000704
 0.015071 0.039132 0.000682 0.945114
 0.135466 0.000682 0.019907 0.843944
 0.098915 0.154545 0.008641 0.737900
 0.124013 0.874600 0.000682 0.000704
 0.335079 0.000682 0.539853 0.124386
 0.019930 0.812467 0.027866 0.139737

MOTIF 3-AAATGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 6.5e-001
 0.742130 0.017645 0.034120 0.206105
 0.996454 0.001169 0.001169 0.001207
 0.925485 0.001169 0.072138 0.001207
 0.001207 0.001169 0.001169 0.996454
 0.201919 0.001169 0.557376 0.239535
 0.996454 0.001169 0.001169 0.001207
 0.897496 0.001169 0.067177 0.034158
 0.883518 0.001169 0.114105 0.001207

MOTIF 4-GAAATGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.001361 0.001318 0.958811 0.038510
 0.847289 0.001318 0.075734 0.075658
 0.977428 0.001318 0.001318 0.019935
 0.884438 0.001318 0.112883 0.001361
 0.001361 0.075734 0.038467 0.884438
 0.075658 0.001318 0.809858 0.113165
 0.001361 0.847007 0.150271 0.001361
 0.120737 0.001318 0.876583 0.001361

MOTIF 5-ACARCAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.0e+000
 0.996276 0.001228 0.001228 0.001268
 0.001268 0.718654 0.001228 0.278850
 0.996276 0.001228 0.001228 0.001268
 0.364003 0.001228 0.598901 0.035868
 0.001268 0.996236 0.001228 0.001268
 0.892141 0.105363 0.001228 0.001268
 0.961676 0.001228 0.001228 0.035868
 0.001268 0.996236 0.001228 0.001268

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6854.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG6854/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.85 seconds
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