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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.302 C 0.198 G 0.198 T 0.302 

MOTIF 1-GGCAKCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 2.4e-002
 0.000938 0.000615 0.997508 0.000938
 0.033315 0.000615 0.965132 0.000938
 0.009854 0.837549 0.000615 0.151981
 0.976293 0.000615 0.000615 0.022476
 0.044083 0.086975 0.474401 0.394540
 0.000938 0.975970 0.022153 0.000938
 0.976293 0.000615 0.022153 0.000938
 0.000938 0.869648 0.000615 0.128798

MOTIF 2-AAAGTCCR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.5e-002
 0.996979 0.000857 0.000857 0.001307
 0.936971 0.000857 0.000857 0.061315
 0.936874 0.000857 0.060962 0.001307
 0.091610 0.000857 0.906226 0.001307
 0.031311 0.000857 0.060962 0.906870
 0.001307 0.851638 0.000857 0.146198
 0.001307 0.936424 0.060962 0.001307
 0.395350 0.000857 0.542381 0.061412

MOTIF 3-AAATAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 102 P= 5.0e-001
 0.996741 0.000925 0.000925 0.001410
 0.996741 0.000925 0.000925 0.001410
 0.678125 0.104933 0.082966 0.133976
 0.001410 0.000925 0.000925 0.996741
 0.859622 0.000925 0.138043 0.001410
 0.872255 0.089119 0.037217 0.001410
 0.708213 0.257086 0.017108 0.017593
 0.866193 0.069545 0.000925 0.063338

MOTIF 4-CCCCGCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.003186 0.991538 0.002089 0.003186
 0.149693 0.771896 0.002089 0.076322
 0.076439 0.845032 0.002089 0.076439
 0.003186 0.771424 0.002089 0.223300
 0.003186 0.002089 0.918403 0.076322
 0.003186 0.991538 0.002089 0.003186
 0.003186 0.991538 0.002089 0.003186
 0.003186 0.881599 0.075460 0.039754

MOTIF 5-AATAGGTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.995341 0.001322 0.001322 0.002016
 0.949077 0.047585 0.001322 0.002016
 0.150684 0.001322 0.047585 0.800409
 0.890350 0.047585 0.047585 0.014479
 0.048279 0.001322 0.762431 0.187968
 0.021167 0.047585 0.877356 0.053891
 0.048279 0.020473 0.001322 0.929926
 0.809389 0.001322 0.001322 0.187968

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6808.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG6808/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.72 seconds
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