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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.343 C 0.157 G 0.157 T 0.343 

MOTIF 1-CACWGAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.001564 0.996158 0.000713 0.001564
 0.997009 0.000713 0.000713 0.001564
 0.001564 0.996158 0.000713 0.001564
 0.331756 0.063963 0.000713 0.603567
 0.001564 0.000713 0.996158 0.001564
 0.522173 0.190668 0.063862 0.223298
 0.001564 0.000713 0.996158 0.001564
 0.635756 0.203790 0.158890 0.001564

MOTIF 2-TAAAATGW STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 106 P= 8.2e-001
 0.001419 0.019133 0.014876 0.964572
 0.839098 0.095529 0.024174 0.041199
 0.810317 0.019133 0.048040 0.122510
 0.802937 0.053382 0.094215 0.049466
 0.794844 0.060525 0.043253 0.101378
 0.004006 0.026878 0.010913 0.958203
 0.051701 0.003475 0.926033 0.018792
 0.529856 0.069208 0.124147 0.276789

MOTIF 3-TCCTTAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.034752 0.033860 0.033860 0.897528
 0.001640 0.768030 0.228690 0.001640
 0.001640 0.962859 0.033860 0.001640
 0.001640 0.000748 0.199579 0.798032
 0.020205 0.000748 0.000748 0.978299
 0.830661 0.066972 0.000748 0.101619
 0.846415 0.000748 0.100190 0.052647
 0.897528 0.000748 0.033860 0.067864

MOTIF 4-CAGTRCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.003256 0.992002 0.001485 0.003256
 0.796376 0.001485 0.067214 0.134926
 0.003256 0.001485 0.992002 0.003256
 0.003256 0.001485 0.001485 0.993774
 0.334029 0.001485 0.595500 0.068985
 0.003256 0.926273 0.067214 0.003256
 0.928045 0.001485 0.067214 0.003256
 0.003256 0.001485 0.992002 0.003256

MOTIF 5-AGATACAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.910361 0.083733 0.001850 0.004057
 0.004057 0.001850 0.990037 0.004057
 0.910361 0.001850 0.083733 0.004057
 0.004057 0.001850 0.083733 0.910361
 0.910361 0.083733 0.001850 0.004057
 0.004057 0.990037 0.001850 0.004057
 0.910361 0.001850 0.083733 0.004057
 0.004057 0.001850 0.001850 0.992243

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6792.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG6792/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.77 seconds
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