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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.282 C 0.218 G 0.218 T 0.282 

MOTIF 1-ACAGTTTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 195 P= 8.1e-007
 0.933625 0.014450 0.047456 0.004468
 0.007439 0.985198 0.000778 0.006584
 0.990673 0.000778 0.007518 0.001031
 0.001837 0.003740 0.991008 0.003416
 0.000257 0.001406 0.000198 0.998138
 0.000257 0.000198 0.000198 0.999346
 0.000257 0.000198 0.011767 0.987778
 0.017875 0.006571 0.852586 0.122968

MOTIF 2-AGCCACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 129 P= 1.8e-003
 0.998886 0.000338 0.000338 0.000439
 0.051596 0.067317 0.805047 0.076040
 0.000439 0.607243 0.256315 0.136004
 0.004894 0.980201 0.000338 0.014566
 0.994933 0.000338 0.004290 0.000439
 0.026491 0.869489 0.000338 0.103683
 0.011684 0.000338 0.000338 0.987640
 0.088879 0.027264 0.883418 0.000439

MOTIF 3-GATTTCCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.7e-001
 0.001652 0.041818 0.914333 0.042197
 0.816707 0.041818 0.001273 0.140202
 0.082742 0.099148 0.069468 0.748642
 0.140202 0.082363 0.082363 0.695071
 0.042197 0.041818 0.041818 0.874167
 0.001652 0.954878 0.001273 0.042197
 0.001652 0.954878 0.041818 0.001652
 0.082873 0.082363 0.752021 0.082742

MOTIF 4-AATTCAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 5.0e-001
 0.967129 0.030722 0.000935 0.001214
 0.830691 0.000935 0.090584 0.077790
 0.065368 0.000935 0.000935 0.932762
 0.001214 0.044595 0.246555 0.707636
 0.221549 0.718871 0.000935 0.058646
 0.937342 0.030722 0.030722 0.001214
 0.963516 0.000935 0.000935 0.034614
 0.001214 0.000935 0.000935 0.996916

MOTIF 5-AYCTTTGR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.996193 0.001154 0.001154 0.001498
 0.001498 0.627554 0.001154 0.369793
 0.001498 0.995849 0.001154 0.001498
 0.001498 0.001154 0.074695 0.922653
 0.185468 0.001154 0.001154 0.812224
 0.001498 0.185124 0.001154 0.812224
 0.001498 0.001154 0.995849 0.001498
 0.333262 0.185124 0.406457 0.075157

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG6654.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG6654/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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