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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.307 C 0.193 G 0.193 T 0.307 

MOTIF 1-AGATGGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 5.5e-002
 0.960130 0.009137 0.009137 0.021596
 0.000916 0.000576 0.997592 0.000916
 0.817744 0.000576 0.170424 0.011256
 0.000916 0.062817 0.126486 0.809781
 0.000916 0.000576 0.997592 0.000916
 0.000916 0.000576 0.939915 0.058593
 0.000916 0.935452 0.042003 0.021629
 0.000916 0.000576 0.997592 0.000916

MOTIF 2-GAGAGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.2e-001
 0.002379 0.001496 0.993745 0.002379
 0.887011 0.001496 0.109114 0.002379
 0.002379 0.001496 0.993745 0.002379
 0.940906 0.001496 0.055219 0.002379
 0.002379 0.001496 0.940023 0.056102
 0.810702 0.023735 0.163183 0.002379
 0.905091 0.001496 0.037311 0.056102
 0.994629 0.001496 0.001496 0.002379

MOTIF 3-AGTTGGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 7.9e-001
 0.845346 0.112972 0.012392 0.029290
 0.119069 0.056876 0.794765 0.029290
 0.029290 0.000781 0.000781 0.969148
 0.085385 0.056922 0.000781 0.856912
 0.029290 0.012392 0.929028 0.029290
 0.001242 0.028829 0.968687 0.001242
 0.085476 0.141155 0.028829 0.744541
 0.783615 0.028829 0.174703 0.012853

MOTIF 4-CTTTTACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 8.3e-001
 0.001747 0.995408 0.001098 0.001747
 0.001747 0.237863 0.001098 0.759292
 0.001747 0.158857 0.119417 0.719979
 0.140167 0.119417 0.198805 0.541611
 0.001747 0.001098 0.001098 0.996057
 0.996057 0.001098 0.001098 0.001747
 0.001747 0.995408 0.001098 0.001747
 0.621127 0.139264 0.237863 0.001747

MOTIF 5-CCAGTGYA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002237 0.994121 0.001406 0.002237
 0.002237 0.943624 0.001406 0.052733
 0.944455 0.001406 0.001406 0.052733
 0.002237 0.001406 0.994121 0.002237
 0.002237 0.001406 0.001406 0.994951
 0.052733 0.001406 0.842469 0.103392
 0.002237 0.637195 0.001406 0.359163
 0.917247 0.001406 0.051903 0.029445

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5245.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG5245/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	1.91 seconds
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