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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.325 C 0.175 G 0.175 T 0.325 

MOTIF 1-CAACCCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.002076 0.994726 0.001123 0.002076
 0.906868 0.001123 0.001123 0.090887
 0.995679 0.001123 0.001123 0.002076
 0.076644 0.564195 0.178889 0.180273
 0.202121 0.675778 0.045457 0.076644
 0.002076 0.928225 0.045457 0.024243
 0.906868 0.089934 0.001123 0.002076
 0.995679 0.001123 0.001123 0.002076

MOTIF 2-AAAGAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.994897 0.001326 0.001326 0.002451
 0.695579 0.001326 0.212570 0.090525
 0.906823 0.001326 0.089399 0.002451
 0.002451 0.001326 0.993771 0.002451
 0.784425 0.001326 0.211797 0.002451
 0.994897 0.001326 0.001326 0.002451
 0.994897 0.001326 0.001326 0.002451
 0.002451 0.001326 0.001326 0.994897

MOTIF 3-TCAGTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.045174 0.087679 0.044247 0.822900
 0.074603 0.792683 0.087540 0.045174
 0.952640 0.044247 0.001093 0.002020
 0.045174 0.009347 0.943459 0.002020
 0.002020 0.001093 0.001093 0.995794
 0.045174 0.001093 0.951713 0.002020
 0.025272 0.880072 0.049481 0.045174
 0.891483 0.087540 0.001093 0.019885

MOTIF 4-ATATTTAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 99 P= 7.3e-001
 0.921394 0.038386 0.024844 0.015376
 0.030722 0.005165 0.020210 0.943903
 0.921352 0.009376 0.051750 0.017522
 0.002935 0.003754 0.078544 0.914767
 0.041798 0.054708 0.182771 0.720723
 0.053110 0.004181 0.010331 0.932378
 0.891725 0.060899 0.045877 0.001500
 0.083685 0.097409 0.032855 0.786050

MOTIF 5-ATATTTTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.938591 0.015955 0.015955 0.029500
 0.029500 0.015955 0.015955 0.938591
 0.938591 0.015955 0.015955 0.029500
 0.029500 0.015955 0.015955 0.938591
 0.029500 0.015955 0.015955 0.938591
 0.029500 0.015955 0.015955 0.938591
 0.029500 0.015955 0.015955 0.938591
 0.938591 0.015955 0.015955 0.029500

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5204.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG5204/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	3.11 seconds
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