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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-AACATGTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 8.2e-004
 0.998107 0.000615 0.000615 0.000664
 0.998107 0.000615 0.000615 0.000664
 0.000664 0.994389 0.000615 0.004333
 0.812576 0.000615 0.117330 0.069479
 0.069479 0.117330 0.000615 0.812576
 0.004333 0.000615 0.994389 0.000664
 0.000664 0.000615 0.000615 0.998107
 0.000664 0.000615 0.000615 0.998107

MOTIF 2-CATCGAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.023600 0.930945 0.021855 0.023600
 0.932691 0.021855 0.021855 0.023600
 0.023600 0.021855 0.021855 0.932691
 0.023600 0.930945 0.021855 0.023600
 0.023600 0.021855 0.930945 0.023600
 0.932691 0.021855 0.021855 0.023600
 0.932691 0.021855 0.021855 0.023600
 0.023600 0.930945 0.021855 0.023600

MOTIF 3-ACCCGTCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.921908 0.073002 0.002447 0.002642
 0.002642 0.992268 0.002447 0.002642
 0.002642 0.850931 0.143784 0.002642
 0.002642 0.992268 0.002447 0.002642
 0.002642 0.073002 0.921713 0.002642
 0.073198 0.143784 0.002447 0.780571
 0.073198 0.780376 0.143784 0.002642
 0.002642 0.002447 0.992268 0.002642

MOTIF 4-CAAACTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 8.6e-001
 0.084804 0.778747 0.037585 0.098864
 0.610761 0.131813 0.063817 0.193608
 0.785083 0.098669 0.115031 0.001218
 0.931499 0.001128 0.066155 0.001218
 0.001218 0.801145 0.098774 0.098864
 0.001218 0.001128 0.001128 0.996527
 0.001218 0.001128 0.996437 0.001218
 0.996527 0.001128 0.001128 0.001218

MOTIF 5-AAGGGGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 9.5e-001
 0.691779 0.262039 0.044569 0.001613
 0.909111 0.001494 0.001494 0.087901
 0.044688 0.001494 0.909130 0.044688
 0.001613 0.001494 0.995280 0.001613
 0.001613 0.001494 0.908992 0.087901
 0.001613 0.044569 0.909130 0.044688
 0.822684 0.001494 0.131135 0.044688
 0.909111 0.001494 0.087782 0.001613

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG5180.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG5180/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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