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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-GCGTTGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 9.5e-002
 0.000956 0.022222 0.975867 0.000956
 0.153757 0.757898 0.022222 0.066123
 0.025196 0.043909 0.908322 0.022573
 0.000956 0.043909 0.000604 0.954532
 0.000956 0.000604 0.004739 0.993702
 0.000956 0.022222 0.975867 0.000956
 0.000956 0.997485 0.000604 0.000956
 0.009905 0.966918 0.000604 0.022573

MOTIF 2-AAAAATAY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 90 P= 1.6e-001
 0.704935 0.000615 0.278804 0.015647
 0.703952 0.088958 0.163746 0.043344
 0.961108 0.000615 0.024400 0.013878
 0.981176 0.000615 0.000615 0.017594
 0.980640 0.007067 0.011320 0.000973
 0.000973 0.000615 0.000615 0.997798
 0.899221 0.000615 0.099191 0.000973
 0.161127 0.291730 0.044707 0.502437

MOTIF 3-CAGYRCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.002899 0.992370 0.001832 0.002899
 0.927751 0.067519 0.001832 0.002899
 0.002899 0.001832 0.992370 0.002899
 0.002899 0.529892 0.166848 0.300362
 0.300362 0.166848 0.529892 0.002899
 0.002899 0.992370 0.001832 0.002899
 0.002899 0.001832 0.067519 0.927751
 0.002899 0.001832 0.992370 0.002899

MOTIF 4-ATCGATAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.0e-001
 0.691633 0.000838 0.124642 0.182887
 0.181812 0.031049 0.051324 0.735814
 0.001327 0.936379 0.000838 0.061456
 0.001327 0.000838 0.993752 0.004083
 0.936964 0.000838 0.060871 0.001327
 0.001327 0.000838 0.000838 0.996996
 0.960589 0.000838 0.037246 0.001327
 0.001327 0.037246 0.960101 0.001327

MOTIF 5-ACTTCTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 8.8e-001
 0.792109 0.044065 0.054698 0.109128
 0.055196 0.852691 0.000504 0.091609
 0.065109 0.051535 0.090731 0.792626
 0.184877 0.018549 0.007974 0.788600
 0.000798 0.952729 0.036653 0.009820
 0.022295 0.087684 0.054640 0.835382
 0.730304 0.116362 0.003956 0.149378
 0.756019 0.036595 0.144925 0.062462

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4854.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG4854/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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