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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.334 C 0.166 G 0.166 T 0.334 

MOTIF 1-GCATAAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.2e-001
 0.030391 0.015064 0.924155 0.030391
 0.030391 0.924155 0.015064 0.030391
 0.939482 0.015064 0.015064 0.030391
 0.030391 0.015064 0.015064 0.939482
 0.939482 0.015064 0.015064 0.030391
 0.939482 0.015064 0.015064 0.030391
 0.939482 0.015064 0.015064 0.030391
 0.030391 0.924155 0.015064 0.030391

MOTIF 2-AARTAYTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 78 P= 3.7e-001
 0.713678 0.048372 0.030191 0.207759
 0.913305 0.046769 0.038504 0.001422
 0.658723 0.000705 0.339150 0.001422
 0.001422 0.000705 0.000705 0.997168
 0.997168 0.000705 0.000705 0.001422
 0.001422 0.339150 0.000705 0.658723
 0.001422 0.038504 0.046769 0.913305
 0.207759 0.030191 0.048372 0.713678

MOTIF 3-ATGCACTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.994443 0.001383 0.001383 0.002791
 0.002791 0.175541 0.175541 0.646126
 0.002791 0.001383 0.993035 0.002791
 0.002791 0.935169 0.001383 0.060657
 0.936576 0.059249 0.001383 0.002791
 0.002791 0.993035 0.001383 0.002791
 0.002791 0.001383 0.001383 0.994443
 0.002791 0.001383 0.993035 0.002791

MOTIF 4-ARGTAATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.993868 0.001526 0.001526 0.003079
 0.324397 0.065376 0.513561 0.096666
 0.003079 0.001526 0.992315 0.003079
 0.003079 0.001526 0.001526 0.993868
 0.930018 0.065376 0.001526 0.003079
 0.930018 0.001526 0.065376 0.003079
 0.003079 0.001526 0.001526 0.993868
 0.801701 0.193694 0.001526 0.003079

MOTIF 5-CAAGTTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 8.8e-001
 0.006309 0.945928 0.016684 0.031079
 0.848861 0.030358 0.060054 0.060727
 0.937855 0.030358 0.030358 0.001430
 0.180766 0.006380 0.760339 0.052515
 0.060775 0.016684 0.060006 0.862535
 0.110595 0.068814 0.089942 0.730649
 0.012317 0.947860 0.030405 0.009417
 0.937807 0.030358 0.000709 0.031126

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4820.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG4820/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.58 seconds
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