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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-ACAGTGGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 176 P= 7.3e-005
 0.996107 0.003351 0.000243 0.000299
 0.000299 0.999159 0.000243 0.000299
 0.910750 0.038031 0.007752 0.043466
 0.241238 0.000243 0.758220 0.000299
 0.003408 0.000243 0.000243 0.996107
 0.000299 0.001679 0.997105 0.000917
 0.022936 0.002473 0.974292 0.000299
 0.030530 0.001679 0.964383 0.003408

MOTIF 2-AGCGCCGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 9.5e-002
 0.898437 0.066524 0.033737 0.001302
 0.132133 0.047266 0.786618 0.033983
 0.132133 0.805770 0.047266 0.014831
 0.007553 0.033737 0.859364 0.099346
 0.132186 0.603900 0.033737 0.230177
 0.033983 0.963659 0.001056 0.001302
 0.001302 0.033737 0.917449 0.047512
 0.132133 0.734626 0.033790 0.099451

MOTIF 3-CACAGTGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.003692 0.989621 0.002994 0.003692
 0.990319 0.002994 0.002994 0.003692
 0.003692 0.989621 0.002994 0.003692
 0.711343 0.281971 0.002994 0.003692
 0.003692 0.002994 0.989621 0.003692
 0.096386 0.002994 0.002994 0.897626
 0.003692 0.002994 0.989621 0.003692
 0.003692 0.002994 0.989621 0.003692

MOTIF 4-CGAAAGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.057223 0.828746 0.056808 0.057223
 0.057311 0.056808 0.883689 0.002192
 0.939222 0.056808 0.001778 0.002192
 0.994253 0.001778 0.001778 0.002192
 0.828984 0.001778 0.112016 0.057223
 0.002192 0.001778 0.772649 0.223381
 0.057223 0.112016 0.828569 0.002192
 0.939222 0.056808 0.001778 0.002192

MOTIF 5-AACAAATT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.934191 0.020355 0.020355 0.025100
 0.934191 0.020355 0.020355 0.025100
 0.025100 0.929445 0.020355 0.025100
 0.934191 0.020355 0.020355 0.025100
 0.934191 0.020355 0.020355 0.025100
 0.934191 0.020355 0.020355 0.025100
 0.025100 0.020355 0.020355 0.934191
 0.025100 0.020355 0.020355 0.934191

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4707.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG4707/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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