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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.349 C 0.151 G 0.151 T 0.349 

MOTIF 1-TTAAGTAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 4.9e-002
 0.100543 0.025345 0.025345 0.848766
 0.149133 0.025345 0.099917 0.725605
 0.867570 0.010809 0.035613 0.086008
 0.846307 0.000541 0.060497 0.092654
 0.067059 0.025345 0.806285 0.101310
 0.075900 0.000541 0.000541 0.923018
 0.813774 0.134829 0.025345 0.026052
 0.001248 0.000541 0.896900 0.101310

MOTIF 2-AAACTARA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 3.0e-001
 0.994735 0.001223 0.001223 0.002819
 0.938702 0.001223 0.057256 0.002819
 0.769517 0.226441 0.001223 0.002819
 0.002819 0.993139 0.001223 0.002819
 0.002819 0.001223 0.001223 0.994735
 0.994735 0.001223 0.001223 0.002819
 0.655810 0.001223 0.340148 0.002819
 0.994735 0.001223 0.001223 0.002819

MOTIF 3-AATGGAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.997086 0.000677 0.000677 0.001560
 0.797960 0.093821 0.106660 0.001560
 0.001560 0.141386 0.000677 0.856376
 0.032575 0.031692 0.899397 0.036337
 0.192469 0.031692 0.743265 0.032575
 0.984247 0.013516 0.000677 0.001560
 0.904042 0.031692 0.000677 0.063589
 0.119860 0.593301 0.218480 0.068359

MOTIF 4-TGCACTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.0e-001
 0.103714 0.000741 0.034707 0.860838
 0.274308 0.000741 0.723242 0.001709
 0.206268 0.757316 0.000741 0.035674
 0.962843 0.000741 0.000741 0.035674
 0.178896 0.818654 0.000741 0.001709
 0.001709 0.204752 0.000741 0.792798
 0.001709 0.000741 0.995841 0.001709
 0.996809 0.000741 0.000741 0.001709

MOTIF 5-TGGATAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.178475 0.059599 0.001273 0.760654
 0.002934 0.001273 0.992859 0.002934
 0.002934 0.001273 0.992859 0.002934
 0.904408 0.001273 0.001273 0.093046
 0.002934 0.059599 0.001273 0.936194
 0.877681 0.001273 0.001273 0.119773
 0.936194 0.059599 0.001273 0.002934
 0.794834 0.025418 0.001273 0.178475

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4318.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG4318/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.80 seconds
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