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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.274 C 0.226 G 0.226 T 0.274 

MOTIF 1-CACAGTGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.5e-002
 0.001036 0.811293 0.000857 0.186814
 0.992232 0.005876 0.000857 0.001036
 0.001036 0.986208 0.000857 0.011899
 0.944643 0.027181 0.027139 0.001036
 0.001036 0.000857 0.997071 0.001036
 0.027276 0.000857 0.027097 0.944770
 0.027276 0.000857 0.970831 0.001036
 0.001036 0.000857 0.997071 0.001036

MOTIF 2-CCATTCGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 3.3e-001
 0.002016 0.943234 0.001667 0.053083
 0.002016 0.943151 0.001667 0.053165
 0.841286 0.001667 0.103964 0.053083
 0.104313 0.001667 0.001667 0.892352
 0.002016 0.052734 0.022807 0.922443
 0.104313 0.892003 0.001667 0.002016
 0.053083 0.103964 0.840937 0.002016
 0.104313 0.789706 0.103964 0.002016

MOTIF 3-AAAAGTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 5.0e-001
 0.910428 0.064223 0.000772 0.024578
 0.804917 0.010560 0.000772 0.183751
 0.916547 0.043790 0.015086 0.024578
 0.883294 0.081569 0.010560 0.024578
 0.041259 0.040540 0.763339 0.154862
 0.038520 0.064361 0.000772 0.896347
 0.997522 0.000772 0.000772 0.000934
 0.747127 0.119222 0.000772 0.132880

MOTIF 4-GGTCACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 7.0e-001
 0.060387 0.000883 0.937663 0.001067
 0.001067 0.000883 0.996983 0.001067
 0.055217 0.000883 0.066456 0.877445
 0.055130 0.915889 0.000883 0.028099
 0.888956 0.000883 0.027914 0.082248
 0.082161 0.823518 0.000883 0.093438
 0.534696 0.217306 0.093253 0.154744
 0.001067 0.807590 0.082063 0.109279

MOTIF 5-AGGTGGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.0e-001
 0.959094 0.001209 0.038235 0.001462
 0.001462 0.001209 0.995867 0.001462
 0.038489 0.001209 0.847403 0.112900
 0.186833 0.016537 0.001209 0.795421
 0.165015 0.075262 0.758261 0.001462
 0.149926 0.038235 0.773349 0.038489
 0.075515 0.921814 0.001209 0.001462
 0.684223 0.075381 0.238934 0.001462

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG4282.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG4282/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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