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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.322 C 0.178 G 0.178 T 0.322 

MOTIF 1-CACTGARA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 5.0e-001
 0.001018 0.997403 0.000561 0.001018
 0.975968 0.000561 0.000561 0.022910
 0.088622 0.849068 0.061292 0.001018
 0.193846 0.176407 0.000561 0.629185
 0.001018 0.000561 0.997403 0.001018
 0.800300 0.000561 0.198120 0.001018
 0.278310 0.176193 0.544478 0.001018
 0.813554 0.119155 0.066273 0.001018

MOTIF 2-ATGTATGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.945910 0.001262 0.050536 0.002292
 0.150587 0.001262 0.001262 0.846888
 0.002292 0.001262 0.994154 0.002292
 0.002292 0.001262 0.099967 0.896479
 0.995183 0.001262 0.001262 0.002292
 0.100996 0.001262 0.021660 0.876081
 0.150587 0.001262 0.845858 0.002292
 0.100996 0.647808 0.050536 0.200660

MOTIF 3-CAACATCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 7.9e-001
 0.001452 0.830315 0.000800 0.167433
 0.948906 0.032020 0.000800 0.018274
 0.934407 0.000800 0.063341 0.001452
 0.001452 0.933755 0.000800 0.063993
 0.934508 0.032020 0.000800 0.032672
 0.049687 0.032020 0.060996 0.857297
 0.063993 0.871113 0.000800 0.064094
 0.245983 0.094662 0.000800 0.658556

MOTIF 4-ACGAAAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.8e-001
 0.938400 0.016145 0.016145 0.029309
 0.029309 0.925236 0.016145 0.029309
 0.029309 0.016145 0.925236 0.029309
 0.938400 0.016145 0.016145 0.029309
 0.938400 0.016145 0.016145 0.029309
 0.938400 0.016145 0.016145 0.029309
 0.029309 0.016145 0.925236 0.029309
 0.938400 0.016145 0.016145 0.029309

MOTIF 5-GAAATGAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 9.5e-001
 0.001656 0.000912 0.816613 0.180819
 0.925201 0.000912 0.000912 0.072974
 0.925201 0.000912 0.000912 0.072974
 0.907515 0.036514 0.036514 0.019457
 0.037258 0.015650 0.072231 0.874861
 0.001656 0.000912 0.995776 0.001656
 0.913071 0.000912 0.000912 0.085105
 0.023208 0.108063 0.108063 0.760666

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3919.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG3919/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	3.50 seconds
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