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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.361 C 0.139 G 0.139 T 0.361 

MOTIF 1-ACTAGATT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 3.0e-001
 0.941882 0.012664 0.012664 0.032791
 0.032791 0.921755 0.012664 0.032791
 0.032791 0.012664 0.012664 0.941882
 0.941882 0.012664 0.012664 0.032791
 0.032791 0.012664 0.921755 0.032791
 0.941882 0.012664 0.012664 0.032791
 0.032791 0.012664 0.012664 0.941882
 0.032791 0.012664 0.012664 0.941882

MOTIF 2-ATTTAAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 87 P= 6.2e-001
 0.898178 0.008603 0.014096 0.079123
 0.034164 0.005997 0.000653 0.959187
 0.060772 0.033127 0.033127 0.872975
 0.045374 0.033127 0.014096 0.907404
 0.989176 0.000653 0.006864 0.003308
 0.928095 0.014096 0.033179 0.024631
 0.001690 0.127107 0.718973 0.152231
 0.788962 0.059735 0.013759 0.137545

MOTIF 3-WATATATW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 8.6e-001
 0.447079 0.000992 0.042419 0.509509
 0.995446 0.000992 0.000992 0.002570
 0.002570 0.000992 0.000992 0.995446
 0.995446 0.000992 0.000992 0.002570
 0.002570 0.000992 0.000992 0.995446
 0.995446 0.000992 0.000992 0.002570
 0.002570 0.000992 0.000992 0.995446
 0.509509 0.042419 0.000992 0.447079

MOTIF 4-ACAGTTGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 8.8e-001
 0.996053 0.000860 0.000860 0.002227
 0.002227 0.973288 0.000860 0.023625
 0.996053 0.000860 0.000860 0.002227
 0.087957 0.000860 0.908955 0.002227
 0.002227 0.000860 0.000860 0.996053
 0.045023 0.000860 0.287167 0.666949
 0.131030 0.000860 0.780152 0.087957
 0.216760 0.523030 0.086522 0.173688

MOTIF 5-AAATGATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 9.1e-001
 0.915265 0.013923 0.064899 0.005914
 0.900712 0.000645 0.064899 0.033745
 0.967130 0.013923 0.010174 0.008774
 0.029935 0.000645 0.129568 0.839852
 0.001669 0.000645 0.996017 0.001669
 0.882188 0.004571 0.050201 0.063041
 0.195649 0.020062 0.032720 0.751569
 0.770352 0.078454 0.006780 0.144415

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34406.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG34406/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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