********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.285 C 0.215 G 0.215 T 0.285 

MOTIF 1-CYGATAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 121 P= 1.3e-002
 0.000428 0.619664 0.245951 0.133957
 0.169566 0.300018 0.010756 0.519660
 0.000428 0.010739 0.977972 0.010861
 0.988510 0.000323 0.010739 0.000428
 0.000428 0.005531 0.021171 0.972869
 0.955170 0.044079 0.000323 0.000428
 0.968574 0.015051 0.015947 0.000428
 0.063144 0.063147 0.805588 0.068121

MOTIF 2-ATTTATGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 5.0e-001
 0.690521 0.056049 0.186945 0.066485
 0.031634 0.000940 0.095583 0.871844
 0.001245 0.000940 0.091909 0.905906
 0.001245 0.000940 0.031230 0.966585
 0.936197 0.000940 0.061618 0.001245
 0.001245 0.016085 0.000940 0.981730
 0.035210 0.000940 0.962605 0.001245
 0.107632 0.092104 0.799018 0.001245

MOTIF 3-CTAATCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.003109 0.991437 0.002345 0.003109
 0.003109 0.002345 0.002345 0.992200
 0.992200 0.002345 0.002345 0.003109
 0.765122 0.077957 0.153812 0.003109
 0.003109 0.002345 0.002345 0.992200
 0.003109 0.991437 0.002345 0.003109
 0.764634 0.002345 0.002345 0.230675
 0.992200 0.002345 0.002345 0.003109

MOTIF 4-CCACTTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.121101 0.876035 0.001231 0.001632
 0.001632 0.955809 0.040926 0.001632
 0.995905 0.001231 0.001231 0.001632
 0.135078 0.702508 0.160781 0.001632
 0.001632 0.001231 0.001231 0.995905
 0.001632 0.080749 0.040926 0.876692
 0.001632 0.160781 0.835955 0.001632
 0.995905 0.001231 0.001231 0.001632

MOTIF 5-GCGTAAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.0e+000
 0.001223 0.030679 0.758005 0.210093
 0.001223 0.996630 0.000923 0.001223
 0.001223 0.000923 0.996630 0.001223
 0.001223 0.000923 0.060531 0.937323
 0.669231 0.239259 0.000923 0.090587
 0.895344 0.102509 0.000923 0.001223
 0.580059 0.030679 0.209311 0.179951
 0.150292 0.132361 0.000923 0.716424

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34376.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG34376/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.88 seconds
********************************************************************************