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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.343 C 0.157 G 0.157 T 0.343 

MOTIF 1-AATTGAGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.860958 0.134261 0.001501 0.003280
 0.860958 0.001501 0.134261 0.003280
 0.114748 0.112969 0.001501 0.770782
 0.038988 0.001501 0.001501 0.958009
 0.003280 0.001501 0.991940 0.003280
 0.993718 0.001501 0.001501 0.003280
 0.003280 0.001501 0.991940 0.003280
 0.003280 0.001501 0.134261 0.860958

MOTIF 2-AAATGGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 6.5e-001
 0.820499 0.027259 0.086261 0.065981
 0.970818 0.000604 0.000604 0.027975
 0.811311 0.014966 0.065265 0.108458
 0.012077 0.030493 0.049100 0.908331
 0.041545 0.108091 0.849045 0.001319
 0.001319 0.000604 0.946775 0.051302
 0.913855 0.046532 0.011638 0.027975
 0.836544 0.054001 0.000604 0.108851

MOTIF 3-AAGCGAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.891631 0.000884 0.039912 0.067574
 0.930658 0.000884 0.000884 0.067574
 0.040959 0.000884 0.917198 0.040959
 0.072937 0.859202 0.039912 0.027950
 0.001931 0.000884 0.974225 0.022960
 0.924961 0.017040 0.017040 0.040959
 0.813198 0.000884 0.066526 0.119392
 0.237201 0.000884 0.079065 0.682850

MOTIF 4-CTAATACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.003760 0.990759 0.001721 0.003760
 0.003760 0.001721 0.001721 0.992798
 0.916812 0.001721 0.077707 0.003760
 0.764596 0.001721 0.077707 0.155976
 0.003760 0.001721 0.077707 0.916812
 0.916812 0.077707 0.001721 0.003760
 0.003760 0.990759 0.001721 0.003760
 0.232452 0.153937 0.077707 0.535904

MOTIF 5-CAAGAAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.0e+000
 0.002086 0.915638 0.052086 0.030190
 0.936330 0.018406 0.043178 0.002086
 0.983481 0.000955 0.000955 0.014610
 0.002086 0.099765 0.769188 0.128961
 0.996004 0.000955 0.000955 0.002086
 0.869402 0.000955 0.043110 0.086533
 0.002086 0.091749 0.801817 0.104348
 0.953849 0.000955 0.000955 0.044242

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG34367.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG34367/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.71 seconds
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