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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.312 C 0.188 G 0.188 T 0.312 

MOTIF 1-KGTAAACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 124 P= 5.7e-002
 0.197815 0.013342 0.462355 0.326488
 0.029059 0.000385 0.964049 0.006506
 0.024150 0.317181 0.006254 0.652415
 0.992724 0.000385 0.006254 0.000638
 0.832480 0.166497 0.000385 0.000638
 0.978547 0.020430 0.000385 0.000638
 0.007726 0.693086 0.000385 0.298803
 0.984416 0.014562 0.000385 0.000638

MOTIF 2-CGATCCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 1.2e-001
 0.039665 0.939556 0.019908 0.000872
 0.122441 0.173288 0.703399 0.000872
 0.580790 0.196473 0.019908 0.202829
 0.000872 0.107122 0.000527 0.891480
 0.059015 0.920206 0.000527 0.020253
 0.039634 0.632733 0.229857 0.097777
 0.586261 0.132859 0.058732 0.222148
 0.000872 0.892740 0.047312 0.059077

MOTIF 3-ATATTTRA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 3.6e-001
 0.967844 0.000795 0.030046 0.001315
 0.001315 0.112323 0.015420 0.870941
 0.967844 0.000795 0.030046 0.001315
 0.001315 0.000795 0.071501 0.926389
 0.056280 0.000795 0.000795 0.942131
 0.059913 0.000795 0.000795 0.938498
 0.332632 0.000795 0.665258 0.001315
 0.829633 0.000795 0.000795 0.168778

MOTIF 4-AAAGTAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.694458 0.002015 0.002015 0.301512
 0.867859 0.002015 0.002015 0.128110
 0.918449 0.002015 0.076200 0.003336
 0.003336 0.002015 0.991313 0.003336
 0.003336 0.002015 0.002015 0.992633
 0.992633 0.002015 0.002015 0.003336
 0.992633 0.002015 0.002015 0.003336
 0.003336 0.002015 0.002015 0.992633

MOTIF 5-GAAATCGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 8.3e-001
 0.001086 0.027741 0.970087 0.001086
 0.917883 0.000656 0.080375 0.001086
 0.949292 0.024811 0.024811 0.001086
 0.997601 0.000656 0.000656 0.001086
 0.057704 0.223607 0.133338 0.585351
 0.049474 0.762603 0.186837 0.001086
 0.175650 0.024811 0.788453 0.011086
 0.779896 0.012734 0.182129 0.025241

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33557.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG33557/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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