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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.335 C 0.165 G 0.165 T 0.335 

MOTIF 1-GATAAGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.2e-001
 0.002811 0.001386 0.992992 0.002811
 0.994417 0.001386 0.001386 0.002811
 0.002811 0.001386 0.001386 0.994417
 0.896553 0.001386 0.001386 0.100675
 0.877860 0.001386 0.117943 0.002811
 0.002811 0.001386 0.992992 0.002811
 0.807440 0.001386 0.188363 0.002811
 0.756151 0.117943 0.001386 0.124520

MOTIF 2-CAAGTGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.002073 0.865820 0.043934 0.088173
 0.935207 0.001022 0.018786 0.044985
 0.867010 0.001022 0.086983 0.044985
 0.002073 0.001022 0.994831 0.002073
 0.002073 0.001022 0.001022 0.995882
 0.174552 0.001022 0.718257 0.106169
 0.044985 0.916392 0.018786 0.019837
 0.935207 0.001022 0.043934 0.019837

MOTIF 3-TATAAATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 9.6e-001
 0.002218 0.001093 0.019620 0.977069
 0.977069 0.019620 0.001093 0.002218
 0.002218 0.001093 0.080190 0.916499
 0.959107 0.002237 0.028883 0.009773
 0.742235 0.116257 0.139290 0.002218
 0.852626 0.024046 0.099964 0.023363
 0.002218 0.001093 0.121250 0.875439
 0.911524 0.085165 0.001093 0.002218

MOTIF 4-AGTTGAGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.972604 0.001280 0.001280 0.024836
 0.002596 0.001280 0.993529 0.002596
 0.002596 0.055005 0.055005 0.887394
 0.002596 0.162976 0.055005 0.779423
 0.002596 0.001280 0.993529 0.002596
 0.725176 0.055005 0.001280 0.218539
 0.002596 0.001280 0.993529 0.002596
 0.056321 0.109077 0.001280 0.833322

MOTIF 5-CAAACAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.0e+000
 0.002066 0.994850 0.001018 0.002066
 0.953141 0.043775 0.001018 0.002066
 0.953141 0.001018 0.001018 0.044822
 0.910247 0.001018 0.086669 0.002066
 0.002066 0.994850 0.001018 0.002066
 0.795576 0.086669 0.072932 0.044822
 0.815743 0.001018 0.043775 0.139464
 0.235484 0.129701 0.009196 0.625619

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG33017.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG33017/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.99 seconds
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