********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.315 C 0.185 G 0.185 T 0.315 

MOTIF 1-GCAAACAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 3.0e-001
 0.001711 0.001008 0.995571 0.001711
 0.001711 0.767605 0.001008 0.229677
 0.954013 0.001008 0.001008 0.043971
 0.914039 0.001008 0.019852 0.065101
 0.814274 0.114438 0.001008 0.070280
 0.001711 0.995571 0.001008 0.001711
 0.768921 0.001008 0.190671 0.039399
 0.996273 0.001008 0.001008 0.001711

MOTIF 2-AGCCGCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.961757 0.035732 0.000931 0.001580
 0.001580 0.000931 0.856592 0.140897
 0.001580 0.717275 0.000931 0.280215
 0.001580 0.995910 0.000931 0.001580
 0.071294 0.000931 0.926195 0.001580
 0.245638 0.737445 0.015337 0.001580
 0.145231 0.209963 0.070534 0.574272
 0.106096 0.035732 0.856592 0.001580

MOTIF 3-AAGAGAGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.922628 0.001883 0.001883 0.073605
 0.922628 0.072293 0.001883 0.003196
 0.003196 0.001883 0.991725 0.003196
 0.852219 0.001883 0.072293 0.073605
 0.003196 0.001883 0.921316 0.073605
 0.993038 0.001883 0.001883 0.003196
 0.003196 0.001883 0.991725 0.003196
 0.003196 0.001883 0.213793 0.781128

MOTIF 4-AAAATGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 5.0e-001
 0.729814 0.000723 0.159628 0.109835
 0.997328 0.000723 0.000723 0.001226
 0.859879 0.046171 0.000723 0.093228
 0.861126 0.000723 0.136925 0.001226
 0.001226 0.120975 0.000723 0.877075
 0.001226 0.000723 0.996824 0.001226
 0.997328 0.000723 0.000723 0.001226
 0.888982 0.109069 0.000723 0.001226

MOTIF 5-TATWWATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.002809 0.001656 0.001656 0.993880
 0.993880 0.001656 0.001656 0.002809
 0.002809 0.001656 0.001656 0.993880
 0.311956 0.001656 0.205398 0.480990
 0.480990 0.205398 0.001656 0.311956
 0.993880 0.001656 0.001656 0.002809
 0.002809 0.001656 0.001656 0.993880
 0.993880 0.001656 0.001656 0.002809

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG32264.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG32264/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n08.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.62 seconds
********************************************************************************