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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.28 C 0.22 G 0.22 T 0.28 

MOTIF 1-AAGCAGTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 191 P= 3.2e-006
 0.999436 0.000172 0.000172 0.000219
 0.999436 0.000172 0.000172 0.000219
 0.000219 0.000172 0.993955 0.005654
 0.000219 0.988529 0.005598 0.005654
 0.999436 0.000172 0.000172 0.000219
 0.000219 0.000172 0.999390 0.000219
 0.003474 0.000172 0.003463 0.992890
 0.039837 0.058664 0.783353 0.118146

MOTIF 2-GRCGCCAY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.5e-002
 0.180675 0.024110 0.794273 0.000943
 0.351677 0.024110 0.576536 0.047677
 0.071045 0.903903 0.024110 0.000943
 0.000943 0.103885 0.870862 0.024310
 0.000943 0.763474 0.000743 0.234841
 0.000943 0.889760 0.000743 0.108554
 0.894392 0.024110 0.033783 0.047715
 0.135662 0.347444 0.026944 0.489950

MOTIF 3-AAATATTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 1.2e-001
 0.961465 0.001109 0.001109 0.036316
 0.916075 0.001109 0.071037 0.011779
 0.907749 0.036017 0.019918 0.036316
 0.001409 0.036017 0.071037 0.891537
 0.797353 0.059822 0.141417 0.001409
 0.036316 0.071037 0.007786 0.884861
 0.001409 0.007786 0.001109 0.989696
 0.060121 0.113285 0.767289 0.059305

MOTIF 4-CGACAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.009034 0.893871 0.017386 0.079708
 0.001574 0.001240 0.956608 0.040578
 0.875192 0.017386 0.066843 0.040578
 0.001574 0.800087 0.079374 0.118965
 0.924649 0.017386 0.017386 0.040578
 0.862409 0.017386 0.001240 0.118965
 0.940796 0.017386 0.040244 0.001574
 0.096192 0.066843 0.079374 0.757591

MOTIF 5-ACATTAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.643101 0.113729 0.113729 0.129441
 0.076577 0.883247 0.038663 0.001512
 0.740127 0.166593 0.016703 0.076577
 0.001512 0.182346 0.001191 0.814951
 0.114050 0.001191 0.001191 0.883568
 0.933079 0.001191 0.001191 0.064539
 0.001512 0.001191 0.995785 0.001512
 0.771031 0.001191 0.001191 0.226587

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG31365.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG31365/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	2.14 seconds
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