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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.241 C 0.259 G 0.259 T 0.241 

MOTIF 1-ACGCCCMC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 206 P= 2.0e-008
 0.934016 0.065481 0.000260 0.000243
 0.000243 0.993251 0.000260 0.006246
 0.000243 0.000260 0.995771 0.003727
 0.000243 0.999255 0.000260 0.000243
 0.000243 0.999255 0.000260 0.000243
 0.000243 0.995771 0.003744 0.000243
 0.638347 0.352979 0.000260 0.008414
 0.000243 0.889610 0.000260 0.109888

MOTIF 2-AMCGCCCW STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 1.7e-001
 0.909257 0.067098 0.000822 0.022823
 0.329172 0.625162 0.022878 0.022788
 0.000767 0.975624 0.000822 0.022788
 0.022788 0.000822 0.975624 0.000767
 0.076016 0.900374 0.022843 0.000767
 0.022788 0.953603 0.000822 0.022788
 0.000767 0.869426 0.000822 0.128986
 0.311213 0.067098 0.120327 0.501363

MOTIF 3-CAGCAGCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.001620 0.948491 0.048269 0.001620
 0.854860 0.001737 0.141783 0.001620
 0.048152 0.001737 0.948491 0.001620
 0.001620 0.948491 0.048269 0.001620
 0.994907 0.001737 0.001737 0.001620
 0.001620 0.048269 0.948491 0.001620
 0.141666 0.574885 0.141783 0.141666
 0.081796 0.001737 0.055655 0.860812

MOTIF 4-WATCGATW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.415874 0.019425 0.127935 0.436766
 0.941642 0.001349 0.055750 0.001258
 0.001258 0.117400 0.128285 0.753056
 0.001258 0.996134 0.001349 0.001258
 0.001258 0.001349 0.996134 0.001258
 0.753056 0.128285 0.117400 0.001258
 0.001258 0.055750 0.001349 0.941642
 0.436766 0.127935 0.019425 0.415874

MOTIF 5-TACATAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002027 0.002173 0.060403 0.935396
 0.818373 0.002173 0.002173 0.177280
 0.177280 0.760289 0.060403 0.002027
 0.818749 0.002173 0.060403 0.118675
 0.002027 0.118821 0.002173 0.876979
 0.993626 0.002173 0.002173 0.002027
 0.876979 0.002173 0.118821 0.002027
 0.002027 0.060403 0.002173 0.935396

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG3065.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG3065/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.53 seconds
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