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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.361 C 0.139 G 0.139 T 0.361 

MOTIF 1-ATTGTGAW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 4.9e-002
 0.812966 0.031251 0.092819 0.062964
 0.001594 0.000616 0.003429 0.994361
 0.014276 0.031251 0.000616 0.953857
 0.001594 0.000616 0.996196 0.001594
 0.063063 0.031251 0.000616 0.905070
 0.001594 0.000616 0.996196 0.001594
 0.905169 0.000616 0.061985 0.032230
 0.423293 0.092819 0.061985 0.421903

MOTIF 2-CATTTMAD STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 82 P= 6.9e-002
 0.001252 0.997012 0.000484 0.001252
 0.747697 0.000484 0.000484 0.251336
 0.001252 0.153755 0.000484 0.844509
 0.001252 0.130986 0.000484 0.867279
 0.001252 0.000484 0.005086 0.993179
 0.490881 0.483322 0.024545 0.001252
 0.820996 0.177268 0.000484 0.001252
 0.251366 0.000484 0.292042 0.456109

MOTIF 3-ATATATAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 101 P= 2.6e-001
 0.995657 0.000946 0.000946 0.002451
 0.002451 0.031212 0.000946 0.965391
 0.871409 0.059358 0.000946 0.068286
 0.103401 0.221184 0.000946 0.674469
 0.674469 0.000946 0.221184 0.103401
 0.068286 0.000946 0.059358 0.871409
 0.965391 0.000946 0.031212 0.002451
 0.002451 0.000946 0.000946 0.995657

MOTIF 4-CTTACAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.002540 0.993940 0.000981 0.002540
 0.296316 0.021184 0.000981 0.681519
 0.084627 0.000981 0.049786 0.864606
 0.871291 0.049786 0.000981 0.077943
 0.002540 0.993940 0.000981 0.002540
 0.849084 0.049786 0.098591 0.002540
 0.800279 0.049786 0.098591 0.051345
 0.897732 0.000981 0.000981 0.100307

MOTIF 5-GTTTTAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 6.7e-001
 0.003059 0.001181 0.992702 0.003059
 0.089208 0.001181 0.001181 0.908430
 0.309978 0.059957 0.001181 0.628884
 0.003059 0.178649 0.001181 0.817111
 0.003059 0.001181 0.001181 0.994579
 0.994579 0.001181 0.001181 0.003059
 0.970248 0.001181 0.025512 0.003059
 0.994579 0.001181 0.001181 0.003059

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2712.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG2712/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	1.88 seconds
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