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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.371 C 0.129 G 0.129 T 0.371 

MOTIF 1-CATATATG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.003904 0.990840 0.001352 0.003904
 0.829011 0.037782 0.001352 0.131855
 0.003904 0.001352 0.037782 0.956962
 0.956962 0.037782 0.001352 0.003904
 0.003904 0.001352 0.037782 0.956962
 0.956962 0.037782 0.001352 0.003904
 0.131855 0.001352 0.037782 0.829011
 0.003904 0.001352 0.990840 0.003904

MOTIF 2-TWTTAAWA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 6.5e-001
 0.033764 0.011691 0.011691 0.942855
 0.488309 0.011691 0.011691 0.488309
 0.033764 0.011691 0.011691 0.942855
 0.033764 0.011691 0.011691 0.942855
 0.942855 0.011691 0.011691 0.033764
 0.942855 0.011691 0.011691 0.033764
 0.488309 0.011691 0.011691 0.488309
 0.942855 0.011691 0.011691 0.033764

MOTIF 3-CATTTAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 7.0e-001
 0.002181 0.994882 0.000755 0.002181
 0.955597 0.000755 0.000755 0.042892
 0.042892 0.041466 0.082177 0.833464
 0.083734 0.082177 0.041466 0.792622
 0.002181 0.000755 0.082308 0.914755
 0.996308 0.000755 0.000755 0.002181
 0.002181 0.000755 0.890222 0.106841
 0.124445 0.635313 0.163993 0.076250

MOTIF 4-AAACAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 8.3e-001
 0.877797 0.000983 0.000983 0.120236
 0.906046 0.000983 0.090130 0.002840
 0.809039 0.000983 0.000983 0.188995
 0.002840 0.993337 0.000983 0.002840
 0.939818 0.000983 0.053986 0.005213
 0.889704 0.000983 0.106472 0.002840
 0.995193 0.000983 0.000983 0.002840
 0.002840 0.000983 0.000983 0.995193

MOTIF 5-ACTTTAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.697691 0.000917 0.000917 0.300474
 0.002650 0.993783 0.000917 0.002650
 0.052101 0.000917 0.198881 0.748101
 0.052101 0.000917 0.000917 0.946064
 0.002650 0.000917 0.000917 0.995515
 0.847003 0.149430 0.000917 0.002650
 0.002650 0.000917 0.993783 0.002650
 0.896454 0.000917 0.000917 0.101711

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG2678.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG2678/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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