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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.332 C 0.168 G 0.168 T 0.332 

MOTIF 1-AAMTAKTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 5.3e-003
 0.905560 0.001093 0.068686 0.024661
 0.875933 0.077979 0.038949 0.007139
 0.291030 0.542932 0.073419 0.092618
 0.002154 0.001093 0.001093 0.995660
 0.995660 0.001093 0.001093 0.002154
 0.092618 0.073419 0.542932 0.291030
 0.007139 0.038949 0.077979 0.875933
 0.024661 0.068686 0.001093 0.905560

MOTIF 2-TACAAWTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.5e-002
 0.003398 0.001724 0.001724 0.993153
 0.993153 0.001724 0.001724 0.003398
 0.003398 0.991479 0.001724 0.003398
 0.884133 0.001724 0.031120 0.083022
 0.851132 0.001724 0.143746 0.003398
 0.554241 0.072849 0.072735 0.300174
 0.003398 0.001724 0.001724 0.993153
 0.993153 0.001724 0.001724 0.003398

MOTIF 3-GGTAAATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.2e-001
 0.071778 0.000686 0.862205 0.065331
 0.034102 0.000686 0.963859 0.001353
 0.001353 0.227843 0.057303 0.713501
 0.997275 0.000686 0.000686 0.001353
 0.827560 0.000686 0.142138 0.029616
 0.868774 0.028949 0.028995 0.073282
 0.001353 0.029041 0.000686 0.968921
 0.850372 0.028949 0.113921 0.006758

MOTIF 4-ATGTACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.995485 0.001137 0.001137 0.002241
 0.002241 0.047964 0.094941 0.854855
 0.002241 0.020522 0.974997 0.002241
 0.096045 0.001137 0.047964 0.854855
 0.948659 0.001137 0.001137 0.049068
 0.002241 0.853448 0.142070 0.002241
 0.995485 0.001137 0.001137 0.002241
 0.002241 0.725192 0.001137 0.271430

MOTIF 5-AAGCAAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 7.6e-001
 0.846148 0.043219 0.024381 0.086252
 0.690516 0.064433 0.094779 0.150272
 0.045555 0.043219 0.901397 0.009829
 0.068781 0.895520 0.004587 0.031112
 0.929961 0.043151 0.004587 0.022301
 0.742110 0.043219 0.085785 0.128886
 0.913570 0.000517 0.021799 0.064114
 0.021065 0.972949 0.000517 0.005470

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18619.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG18619/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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