********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.344 C 0.156 G 0.156 T 0.344 

MOTIF 1-TABTTAAW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 9.8e-002
 0.001518 0.000689 0.031283 0.966510
 0.997104 0.000689 0.000689 0.001518
 0.001518 0.369855 0.231627 0.397000
 0.001518 0.000689 0.000689 0.997104
 0.001518 0.000689 0.000689 0.997104
 0.997104 0.000689 0.000689 0.001518
 0.705785 0.000689 0.292008 0.001518
 0.554105 0.000689 0.000689 0.444517

MOTIF 2-GCACTGAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 3.0e-001
 0.326279 0.000589 0.671835 0.001298
 0.001298 0.996816 0.000589 0.001298
 0.971372 0.000589 0.026741 0.001298
 0.001298 0.996816 0.000589 0.001298
 0.053602 0.026741 0.063762 0.855894
 0.001298 0.000589 0.996816 0.001298
 0.736856 0.000589 0.221014 0.041541
 0.461030 0.000589 0.473911 0.064471

MOTIF 3-AAAGGATT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.993522 0.001541 0.001541 0.003395
 0.787993 0.001541 0.138634 0.071832
 0.993522 0.001541 0.001541 0.003395
 0.003395 0.001541 0.991668 0.003395
 0.003395 0.001541 0.991668 0.003395
 0.993522 0.001541 0.001541 0.003395
 0.003395 0.138634 0.001541 0.856429
 0.169410 0.001541 0.138634 0.690415

MOTIF 4-TAAACAAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 7.0e-001
 0.035284 0.000757 0.068098 0.895861
 0.929477 0.000757 0.068098 0.001668
 0.915669 0.034373 0.014673 0.035284
 0.996818 0.000757 0.000757 0.001668
 0.046786 0.612336 0.135874 0.205003
 0.963202 0.000757 0.000757 0.035284
 0.972275 0.000757 0.007187 0.019781
 0.138192 0.759275 0.014673 0.087859

MOTIF 5-AATAGGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 8.8e-001
 0.899282 0.065861 0.000732 0.034125
 0.885823 0.033244 0.065861 0.015072
 0.066742 0.033244 0.014191 0.885823
 0.885963 0.033244 0.033244 0.047548
 0.112310 0.006951 0.879127 0.001613
 0.105007 0.000732 0.888345 0.005915
 0.899282 0.065861 0.000732 0.034125
 0.885823 0.014191 0.065861 0.034125

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18599.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG18599/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n05.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.86 seconds
********************************************************************************