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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.294 C 0.205 G 0.205 T 0.294 

MOTIF 1-ACCCTCGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 131 P= 1.0e-004
 0.635065 0.225882 0.134072 0.004980
 0.002259 0.996954 0.000323 0.000464
 0.000464 0.987821 0.000323 0.011392
 0.000464 0.998749 0.000323 0.000464
 0.011392 0.011270 0.011235 0.966103
 0.000464 0.987838 0.011235 0.000464
 0.004980 0.004840 0.972858 0.017321
 0.017321 0.827522 0.055208 0.099949

MOTIF 2-GAACTGTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 3.0e-001
 0.000877 0.041911 0.956334 0.000877
 0.608512 0.000612 0.174622 0.216253
 0.844671 0.041911 0.000612 0.112806
 0.021560 0.823656 0.153906 0.000877
 0.000877 0.041911 0.174489 0.782722
 0.042176 0.000612 0.831937 0.125274
 0.173973 0.000612 0.103993 0.721422
 0.782355 0.104059 0.021262 0.092324

MOTIF 3-ACTCTTCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.0e-001
 0.956213 0.001178 0.040920 0.001689
 0.041431 0.948101 0.001178 0.009290
 0.081300 0.001178 0.001178 0.916343
 0.098096 0.779427 0.001178 0.121299
 0.068532 0.120789 0.001178 0.809501
 0.001689 0.040920 0.001178 0.956213
 0.041431 0.888859 0.068022 0.001689
 0.041494 0.080790 0.836285 0.041431

MOTIF 4-GTAGTACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 7.6e-001
 0.026773 0.018682 0.927773 0.026773
 0.026773 0.018682 0.018682 0.935864
 0.935864 0.018682 0.018682 0.026773
 0.026773 0.018682 0.927773 0.026773
 0.026773 0.018682 0.018682 0.935864
 0.935864 0.018682 0.018682 0.026773
 0.026773 0.927773 0.018682 0.026773
 0.026773 0.927773 0.018682 0.026773

MOTIF 5-ATATTCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.935864 0.018682 0.018682 0.026773
 0.026773 0.018682 0.018682 0.935864
 0.935864 0.018682 0.018682 0.026773
 0.026773 0.018682 0.018682 0.935864
 0.026773 0.018682 0.018682 0.935864
 0.026773 0.927773 0.018682 0.026773
 0.935864 0.018682 0.018682 0.026773
 0.935864 0.018682 0.018682 0.026773

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18476.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG18476/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	2.01 seconds
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