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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.227 C 0.273 G 0.273 T 0.227 

MOTIF 1-GAAAGRGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 114 P= 1.9e-002
 0.002478 0.013051 0.984059 0.000412
 0.927364 0.008865 0.025648 0.038123
 0.851723 0.021614 0.088459 0.038204
 0.968248 0.000494 0.025648 0.005610
 0.019812 0.005692 0.970701 0.003795
 0.471738 0.004224 0.460332 0.063706
 0.000412 0.005692 0.968370 0.025526
 0.984235 0.007260 0.002896 0.005610

MOTIF 2-GGCAACAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 5.5e-002
 0.045999 0.042056 0.869957 0.041988
 0.021299 0.087312 0.791083 0.100307
 0.011788 0.867186 0.046000 0.075025
 0.884451 0.011923 0.032545 0.071081
 0.833227 0.019419 0.096895 0.050458
 0.001600 0.885197 0.009348 0.103855
 0.604656 0.183030 0.149704 0.062610
 0.038406 0.042089 0.848357 0.071147

MOTIF 3-AGCGAGAS STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 3.5e-001
 0.995820 0.001475 0.001475 0.001230
 0.001230 0.001475 0.996065 0.001230
 0.001230 0.996065 0.001475 0.001230
 0.001230 0.001475 0.996065 0.001230
 0.995820 0.001475 0.001475 0.001230
 0.043278 0.057525 0.879218 0.019980
 0.845476 0.073115 0.038974 0.042436
 0.001230 0.291221 0.554275 0.153274

MOTIF 4-AGAGGGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 110 P= 3.8e-001
 0.919800 0.021102 0.023181 0.035917
 0.045350 0.062366 0.866801 0.025482
 0.839516 0.085261 0.027904 0.047319
 0.038512 0.116991 0.797187 0.047310
 0.000578 0.059149 0.935655 0.004617
 0.116093 0.007496 0.850929 0.025482
 0.947296 0.007801 0.019604 0.025299
 0.026904 0.114455 0.753346 0.105296

MOTIF 5-ACTGGCTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 8.8e-001
 0.993119 0.002428 0.002428 0.002025
 0.002025 0.993522 0.002428 0.002025
 0.002025 0.126088 0.002428 0.869459
 0.063756 0.002428 0.931791 0.002025
 0.002025 0.064158 0.931791 0.002025
 0.125685 0.808131 0.002428 0.063756
 0.002025 0.064158 0.002428 0.931389
 0.063756 0.002428 0.870060 0.063756

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1832.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG1832/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.84 seconds
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