********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.37 C 0.13 G 0.13 T 0.37 

MOTIF 1-ATTTCTTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 141 P= 3.9e-001
 0.797780 0.098416 0.094827 0.008978
 0.061667 0.090777 0.035587 0.811969
 0.174940 0.056633 0.087076 0.681351
 0.067991 0.029864 0.003789 0.898357
 0.024719 0.954224 0.007422 0.013635
 0.006846 0.109173 0.046156 0.837825
 0.120205 0.009357 0.032306 0.838132
 0.917185 0.003789 0.031414 0.047612

MOTIF 2-AMATATKT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 5.0e-001
 0.997027 0.000615 0.000615 0.001744
 0.420592 0.419553 0.033359 0.126495
 0.930589 0.003741 0.063926 0.001744
 0.001744 0.000615 0.046437 0.951205
 0.951205 0.046437 0.000615 0.001744
 0.001744 0.063926 0.003741 0.930589
 0.126495 0.033359 0.419553 0.420592
 0.001744 0.000615 0.000615 0.997027

MOTIF 3-GATTTCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.002330 0.000821 0.994520 0.002330
 0.864855 0.000821 0.044499 0.089825
 0.020411 0.088176 0.088317 0.803096
 0.046007 0.000821 0.000821 0.952351
 0.220718 0.000821 0.018902 0.759559
 0.002330 0.877309 0.044569 0.075793
 0.952351 0.044499 0.000821 0.002330
 0.142687 0.000821 0.722707 0.133785

MOTIF 4-ACCTAGTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.819778 0.059403 0.117709 0.003110
 0.003110 0.992684 0.001096 0.003110
 0.061417 0.876071 0.001096 0.061417
 0.003110 0.059403 0.117709 0.819778
 0.878085 0.059403 0.059403 0.003110
 0.003110 0.001096 0.875883 0.119911
 0.178030 0.059403 0.117709 0.644858
 0.061417 0.001096 0.700963 0.236524

MOTIF 5-AAGTTGGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.875996 0.001115 0.001115 0.121774
 0.757194 0.001115 0.001115 0.240576
 0.003163 0.001115 0.992559 0.003163
 0.003163 0.160169 0.001115 0.835553
 0.003163 0.119726 0.001115 0.875996
 0.003163 0.001115 0.992559 0.003163
 0.003163 0.001115 0.992559 0.003163
 0.181080 0.119726 0.001115 0.698079

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18262.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG18262/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n03.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.79 seconds
********************************************************************************