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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.273 C 0.227 G 0.227 T 0.273 

MOTIF 1-GTAAACAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 6.9e-002
 0.000652 0.033681 0.965014 0.000652
 0.097245 0.000541 0.133531 0.768683
 0.895802 0.006056 0.000541 0.097602
 0.805813 0.000541 0.110063 0.083582
 0.662843 0.023933 0.033628 0.279596
 0.000652 0.825606 0.000541 0.173201
 0.865302 0.000541 0.083795 0.050362
 0.281837 0.000541 0.716969 0.000652

MOTIF 2-GCCGATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 1.2e-001
 0.001092 0.000906 0.950328 0.047674
 0.084312 0.691091 0.195809 0.028788
 0.139927 0.578547 0.000906 0.280620
 0.001092 0.000906 0.996910 0.001092
 0.913921 0.028601 0.056386 0.001092
 0.001092 0.000906 0.000906 0.997096
 0.941705 0.028601 0.028601 0.001092
 0.983249 0.000906 0.014754 0.001092

MOTIF 3-AGGTGGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.815225 0.066143 0.078536 0.040096
 0.001521 0.001262 0.995696 0.001521
 0.118185 0.001262 0.879032 0.001521
 0.001521 0.001262 0.117548 0.879669
 0.001521 0.001262 0.995696 0.001521
 0.001521 0.039837 0.918546 0.040096
 0.078795 0.879847 0.001262 0.040096
 0.040096 0.039837 0.841272 0.078795

MOTIF 4-CACACATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.001920 0.994567 0.001593 0.001920
 0.994894 0.001593 0.001593 0.001920
 0.001920 0.769170 0.016060 0.212849
 0.833422 0.056198 0.010907 0.099473
 0.001920 0.994567 0.001593 0.001920
 0.750382 0.001593 0.148395 0.099630
 0.001920 0.001593 0.001593 0.994894
 0.994894 0.001593 0.001593 0.001920

MOTIF 5-GAATGGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.002055 0.001705 0.994184 0.002055
 0.890108 0.001705 0.106132 0.002055
 0.890108 0.106132 0.001705 0.002055
 0.002055 0.158598 0.001705 0.837642
 0.002055 0.001705 0.994184 0.002055
 0.158949 0.001705 0.785161 0.054185
 0.054185 0.889925 0.001705 0.054185
 0.785512 0.001705 0.053835 0.158949

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17912.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CG17912/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c26n02.farnam.hpc.yale.internal
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FINALTIME:	1.74 seconds
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